View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4175_low_2 (Length: 614)

Name: NF4175_low_2
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4175_low_2
NF4175_low_2
[»] chr5 (3 HSPs)
chr5 (271-577)||(33049975-33050290)
chr5 (18-145)||(33049852-33049978)
chr5 (38-341)||(9504278-9504581)
[»] chr1 (3 HSPs)
chr1 (245-339)||(28452125-28452219)
chr1 (18-111)||(28452357-28452450)
chr1 (535-575)||(28451893-28451933)
[»] chr2 (4 HSPs)
chr2 (74-341)||(45503996-45504263)
chr2 (74-341)||(45496254-45496521)
chr2 (74-341)||(21793691-21793958)
chr2 (74-341)||(5984098-5984365)
[»] chr4 (1 HSPs)
chr4 (71-341)||(16847069-16847339)
[»] scaffold0014 (1 HSPs)
scaffold0014 (137-264)||(61808-61934)
[»] chr6 (1 HSPs)
chr6 (137-341)||(7500570-7500774)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 271 - 577
Target Start/End: Original strand, 33049975 - 33050290
Alignment:
Q  271 tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcact----------------gataggaacaaa 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||    
T  33049975 tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcacatgaattgaggttaaccgataggaacaaa 33050074  T
Q  355 gaaaaatccaaaggttttgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatacaagaaaggaaagaattattggaatgataatgctt 454  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  33050075 gaaaaatccaaaggttctgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatgcaagaaaggaaagaattattggaatgataaagctt 33050174  T
Q  455 ccaagaatgatgaaggttcaagtaaaaataaagaaagcttcgagaaagaatgagattcaatgatataatcttaaaaaatgggggcattatgtatctgaat 554  Q
    ||||||||||| ||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050175 ccaagaatgattaaggtt-------aaataaagaaagcttcgagaaagaaggagattcaatgatataatcttaaaaaatgggggcattatgtatctgaat 33050267  T
Q  555 gcaagtccaagaaagttccaagg 577  Q
     ||||||||||||||||||||||    
T  33050268 tcaagtccaagaaagttccaagg 33050290  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 33049852 - 33049978
Alignment:
Q  18 aaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33049852 aaaatgcgaaagaaacttgagatacacttgagagattgtattatggatataaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagat 33049951  T
Q  118 gctgaatatggaggaaggtgaatatgtg 145  Q
    | ||||||||||||| ||||||||||||    
T  33049952 g-tgaatatggaggatggtgaatatgtg 33049978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 341
Target Start/End: Original strand, 9504278 - 9504581
Alignment:
Q  38 gatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtg 137  Q
    |||||| | |||| ||||||||||||  |||  || |||||||| ||||| |||||| | || |||| ||| || ||  || |||  ||||| ||||  |    
T  9504278 gatacattagagaaattgtattatggtgatggtaagttgaagaaggtgagacttcaacctttgagaagacagtatgaagtgttgacaatggaagaagaag 9504377  T
Q  138 aatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttct 237  Q
    ||| ||| |||||||||||||||||  || | |||||  |||||||||||| ||| |||  ||| ||  |||||||  |||||||| | |||||||||||    
T  9504378 aatctgttagtcaatactttgataaggtgatcaatcttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttct 9504477  T
Q  238 cagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaa 337  Q
    || ||  || ||| ||||||||||||| ||||| |||| | |||| ||||| ||||| || |||   |||||||| || ||||| || | ||| ||||||    
T  9504478 caaaaccttaacatcaagatttgatcacattgtagtggccctagaggaatctaaagacttagattctatgaagatagaggaactgcaggaaagtcttgaa 9504577  T
Q  338 gcac 341  Q
    ||||    
T  9504578 gcac 9504581  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 28452219 - 28452125
Alignment:
Q  245 ttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagc 339  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||    
T  28452219 ttgacaccaaggtttgatcatattgttgtagtcttagaagaatccaaagatttggatgtgatcaagattgaagaattgcaggcaagtcttgaagc 28452125  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 28452450 - 28452357
Alignment:
Q  18 aaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaata 111  Q
    |||||||||| ||||||||||||||  || |||| ||||||| |||| ||| ||| |||||||| ||| | |||||||||||||| | ||||||    
T  28452450 aaaatgcgaaggaaacttgagatactattaagaggttgtattctggagatggaaagttgaagaaggtgggacttcaagcattaaggagacaata 28452357  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 575
Target Start/End: Complemental strand, 28451933 - 28451893
Alignment:
Q  535 ggggcattatgtatctgaatgcaagtccaagaaagttccaa 575  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  28451933 ggggcattatgcatctgaatgcaagtctaagaaagttccaa 28451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 74 - 341
Target Start/End: Complemental strand, 45504263 - 45503996
Alignment:
Q  74 ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc 173  Q
    |||||||| ||||| |||||||| || |||| ||| || ||  || |||  ||||| ||||  |||||||| |||||||||||||||||  || | ||||    
T  45504263 ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc 45504164  T
Q  174 tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt 273  Q
    || |||||||||||||||| |||  ||| ||  |||||||  |||||||| | ||||||||||||||||  || ||| ||||||||||||| ||||| ||    
T  45504163 taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt 45504064  T
Q  274 ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac 341  Q
    || | |||| ||||| ||||| || |||   |||||||| || ||||| || ||||| ||||||||||    
T  45504063 ggccctagaggaatctaaagacttagattctatgaagatagaggaactgcaggcaagtcttgaagcac 45503996  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 74 - 341
Target Start/End: Complemental strand, 45496521 - 45496254
Alignment:
Q  74 ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc 173  Q
    |||||||| ||||| |||||||| || |||| ||| || ||  || |||  ||||| ||||  |||||||| |||||||||||||||||  || | ||||    
T  45496521 ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc 45496422  T
Q  174 tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt 273  Q
    || |||||||||||||||| |||  ||| ||  |||||||  |||||||| | ||||||||||||||||  || ||| ||||||||||||| ||||| ||    
T  45496421 taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt 45496322  T
Q  274 ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac 341  Q
    || | |||| ||||| ||||| || |||   |||||||| || || || || ||||| ||||||||||    
T  45496321 ggccctagaggaatctaaagacttagattctatgaagatagaggagctgcaggcaagtcttgaagcac 45496254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 74 - 341
Target Start/End: Complemental strand, 21793958 - 21793691
Alignment:
Q  74 ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc 173  Q
    |||||||| ||||| |||||||| || |||| ||| || ||  || |||  ||||| ||||  |||| ||| |||||||||||||||||  || | ||||    
T  21793958 ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatcaatc 21793859  T
Q  174 tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt 273  Q
    |  |||||||||||| ||| |||  ||| ||  |||||||  |||||||| | ||||||||||||||||  || ||| ||||||||||||| ||||| ||    
T  21793858 ttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt 21793759  T
Q  274 ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac 341  Q
    || | |||| ||||| ||||| || |||   |||||||| || ||||| || ||||| ||||||||||    
T  21793758 ggccctagaggaatctaaagacttagattctatgaagatagaggaactgcaggcaagtcttgaagcac 21793691  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 341
Target Start/End: Original strand, 5984098 - 5984365
Alignment:
Q  74 ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc 173  Q
    |||||||| ||||| |||||||| || |||| ||| || ||  || |||  ||||| ||||  |||| ||| |||||||||||||||||  || | ||||    
T  5984098 ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgctcaatc 5984197  T
Q  174 tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt 273  Q
    |  |||||||||||| ||| |||| ||| ||  |||||||  |||||||| | ||||| ||||||| ||  || ||| ||||||||||||| ||||| ||    
T  5984198 ttacaaatcagatgacaaggaatagtgaaactgtcactgatgtgatgaaggtggaaaaagttctcataaccttaacatcaagatttgatcacattgtagt 5984297  T
Q  274 ggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac 341  Q
    || | |||| ||||| ||||| || |||   |||||||| || ||||| || ||||| ||||||||||    
T  5984298 ggccctagaggaatctaaagacttagattctatgaagatagaggaactacatgcaagtcttgaagcac 5984365  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 341
Target Start/End: Complemental strand, 16847339 - 16847069
Alignment:
Q  71 aaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtga 170  Q
    ||||||||||| ||||| || ||||| || |||| ||| || ||  || |||  ||||| ||||  |||| ||| |||||||||||||||||  || | |    
T  16847339 aaattgaagaaggtgagactgcaagctttgagaagacattatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatca 16847240  T
Q  171 atctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgt 270  Q
    ||||  |||||||||||| ||| |||  ||| ||  |||||||  |||||||| | ||||||||||||||||  || ||| ||| ||||||||| |||||    
T  16847239 atcttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaaaatttgatcacattgt 16847140  T
Q  271 tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcac 341  Q
     |||| | |||| ||||| |||||||| |||   |||||||| || || || |||||||| ||||||||||    
T  16847139 agtggccctagaggaatctaaagatttagattctatgaagatagaggagctgcaagcaagtcttgaagcac 16847069  T

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Target: scaffold0014 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 61808 - 61934
Alignment:
Q  137 gaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttc 236  Q
    |||||||| |||||||||||||||||  || | |||||  |||||||||||| ||| |||  ||| || ||||||||  |||||||| | ||||||||||    
T  61808 gaatatgttagtcaatactttgataaggtg-tcaatcttacaaatcagatgacaaggaatggtgaaactatcactgatgtgatgaaggtggaaaaggttc 61906  T
Q  237 tcagaattttgacaccaagatttgatca 264  Q
    |||||||  ||||| |||||||||||||    
T  61907 tcagaatcgtgacatcaagatttgatca 61934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 341
Target Start/End: Complemental strand, 7500774 - 7500570
Alignment:
Q  137 gaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttc 236  Q
    |||| ||| |||||||||||||||||  || | |||||  |||||||||||| ||| |||  ||| |    ||||||  |||||||| | ||||||||||    
T  7500774 gaatttgttagtcaatactttgataaggtgatcaatcttacaaatcagatgacaaggaatggtgaaattgccactgatgtgatgaaggtggaaaaggttc 7500675  T
Q  237 tcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttga 336  Q
    ||||||  || ||| ||||||||||||| ||||| |||| | |||  ||||| ||||| || |||   | |||||| || ||||| |||||||| |||||    
T  7500674 tcagaaccttaacatcaagatttgatcacattgtagtggccctaggggaatctaaagacttagattctacgaagatagaggaactgcaagcaagtcttga 7500575  T
Q  337 agcac 341  Q
    |||||    
T  7500574 agcac 7500570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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