View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_21 (Length: 295)
Name: NF4175_low_21
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 22 - 295
Target Start/End: Complemental strand, 6287411 - 6287151
Alignment:
| Q |
22 |
gcaactgcctaaagaaaaatgttaactgacaatattattttttctgacggagctaacaatatttatgaatgaacatatacggnnnnnnnnnnnnnnnn-- |
119 |
Q |
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| T |
6287411 |
gcaactgcctaaagaaaaatgttaactgacaatattattttttctgacggagctaacaatatttatgaatgaacatatacggaaaaaataaaaataaaaa |
6287312 |
T |
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| Q |
120 |
----ggcttgtcggcaatctatcgtagttaaaataagttgaagtaaggtttgttttttgagtaagatttgactttaacatgaaacaacagaaaaataaag |
215 |
Q |
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| T |
6287311 |
taaaggcttgtcggcaatctatcgtagttaaaataag-------------------ttgagtaagatttgacttcaacatgaaacaacagaaaaataaag |
6287231 |
T |
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| Q |
216 |
ttagatcaatgcaactttcaattgattaattatatcattttgatggattgcggcttttcacatggacatctagctaatgc |
295 |
Q |
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| T |
6287230 |
ttagatcaatgcaactttcaattgattaattatatcattttgatggatttcggcttttcaaatggacacctagctaatgc |
6287151 |
T |
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