View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_23 (Length: 272)
Name: NF4175_low_23
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 39770575 - 39770677
Alignment:
| Q |
20 |
aagaacacggatatatcatattctcatatcaaacataatcaagtttgattttaacataatttgctttagcgcggcgttttaaataacgatttttgcatgt |
119 |
Q |
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| T |
39770575 |
aagaacacggatatatcatattctcatatcaaacataatcaagtttgattttaacataatctgctttagcgcggcgttttaaataatgattcttgcatgt |
39770674 |
T |
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| Q |
120 |
gtg |
122 |
Q |
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||| |
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| T |
39770675 |
gtg |
39770677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 39770711 - 39770784
Alignment:
| Q |
188 |
atttattgttggattggaatatcatcggtcctctcatattgtgctacggatcactttaaagtttaatcggttca |
261 |
Q |
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| T |
39770711 |
atttgttgttggattggaatatcatcggtcctctcatattatgctacggatcactttaaagtttaatcagttca |
39770784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 13880462 - 13880590
Alignment:
| Q |
118 |
gtgtggatccttagaaacttctaatcatttgtatttacattgctctacttttggagttgtgtgggactatatttattgttggattggaatatcatcggtc |
217 |
Q |
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| T |
13880462 |
gtgtggatctttggaaacctctaatcatttgtttttacactgctctatttttggggctgtttggtactatatttattcttggattggaattctgtcggtc |
13880561 |
T |
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| Q |
218 |
ctctcatattgtgctacggatcactttaa |
246 |
Q |
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| T |
13880562 |
ctcccatattgtgcaacagagcactttaa |
13880590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 14020587 - 14020715
Alignment:
| Q |
118 |
gtgtggatccttagaaacttctaatcatttgtatttacattgctctacttttggagttgtgtgggactatatttattgttggattggaatatcatcggtc |
217 |
Q |
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| T |
14020587 |
gtgtggatctttggaaacctctaatcatttgtttttacactgctctatttttggggctgtttggtactatatttattcttggattggaattctgtcggtc |
14020686 |
T |
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| Q |
218 |
ctctcatattgtgctacggatcactttaa |
246 |
Q |
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||| |||||||||| || || |||||||| |
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| T |
14020687 |
ctcccatattgtgcaacagagcactttaa |
14020715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 37238139 - 37238072
Alignment:
| Q |
139 |
taatcatttgtatttacattgctctacttttggagttgtgtgggactatatttattgttggattggaat |
207 |
Q |
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| T |
37238139 |
taatcatttgtttttacattgttctacttttgg-gctgtttggtactacatttattgttggcttggaat |
37238072 |
T |
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