View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_27 (Length: 247)
Name: NF4175_low_27
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_27 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 8403698 - 8403457
Alignment:
| Q |
6 |
tgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgat |
105 |
Q |
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| T |
8403698 |
tgagatgaagattgcattgcaattgggaagaagtgtaatgcagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgat |
8403599 |
T |
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| Q |
106 |
gaattcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatatagattctttcgattattttgaaaataaa |
205 |
Q |
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| T |
8403598 |
gaattcgccaacaagctcttctgaaaacaacatttttgttttgatttcttgtttgattcattctttacatatagattctttcgattattttgaaaataaa |
8403499 |
T |
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| Q |
206 |
taaagatgttgaacgtttgaggtgaaactcttacttaacaca |
247 |
Q |
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| T |
8403498 |
taaagatgttgaacgtttgaggtgaaactcttacttaacaca |
8403457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 8429549 - 8429362
Alignment:
| Q |
10 |
atgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaat |
109 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||| ||||||| |
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| T |
8429549 |
atgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctgctctctatcggatggaaggacgtgagatagatgaat |
8429450 |
T |
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| Q |
110 |
tcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatatagattctttcgattattttgaaaataaa |
205 |
Q |
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| T |
8429449 |
tcgccaacaaactcttctgaaaacaacatttt--------ttttttgtttgattcattcttttcatacgaattctttcaattattttgaaaataaa |
8429362 |
T |
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