View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4175_low_3 (Length: 557)

Name: NF4175_low_3
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4175_low_3
NF4175_low_3
[»] chr8 (2 HSPs)
chr8 (18-554)||(34174390-34174929)
chr8 (39-111)||(15190516-15190588)
[»] chr4 (8 HSPs)
chr4 (37-554)||(7398739-7399262)
chr4 (319-546)||(39075498-39075725)
chr4 (55-294)||(39075774-39076013)
chr4 (48-178)||(39098318-39098448)
chr4 (17-194)||(39082971-39083148)
chr4 (17-122)||(39088697-39088802)
chr4 (39-182)||(39071527-39071670)
chr4 (58-122)||(7637774-7637838)
[»] scaffold0190 (1 HSPs)
scaffold0190 (42-193)||(5068-5219)
[»] chr6 (2 HSPs)
chr6 (21-121)||(11969616-11969716)
chr6 (24-101)||(6501235-6501312)
[»] chr7 (3 HSPs)
chr7 (53-122)||(8934503-8934572)
chr7 (53-122)||(8935444-8935513)
chr7 (63-122)||(8930058-8930117)
[»] chr3 (2 HSPs)
chr3 (39-122)||(8103183-8103266)
chr3 (43-122)||(40146722-40146801)


Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Complemental strand, 34174929 - 34174390
Alignment:
Q  18 gttcactcattatttcatctcaacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34174929 gttcactcattatttcatctcaacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttca 34174830  T
Q  118 ttggtattgaaatgaaccatgtggttgtagatgccaagtcgttttggcatttcgtcaattcttgggttgaaatctcacatggtttcaataaaccaacaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  34174829 ttggtattgaaatgaaccatgtggttgtagatgccaagtcgttttggcatttcgtcaattctggggtggaaatctcacatggtttcaataaaccaacaaa 34174730  T
Q  218 aatcccttctttcgaacgcttctttccaaacaacattaaccatc---ccatacggtttcctttcacaaaggaaacacaaagtcaacaatttgaagtatca 314  Q
    |||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34174729 aatcccttctttcgaacgtttctttccaaacaacattaaccatcatcccatacggtttcctttcacaaaggaaacacaaagtcaacaatttgaagtatca 34174630  T
Q  315 catcctcatcgaatcttccacttcacaaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaattagtagtagttgcggtggtgataaaataa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34174629 catcctcatcgaatcttccacttcacaaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaattagtagtagttgcggtggtgataaaataa 34174530  T
Q  415 taatatcttcattgcaagcgcttttaagccacttttggcgtttaactataagtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaat 514  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34174529 taatatcttcattgcaagcacttttaagccacttttggcgtttaactataagtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaat 34174430  T
Q  515 agattgtaggacaagaatgtgtccaaagttagcagagaat 554  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34174429 agattgtaggacaagaatgtgtccaaagttagcagagaat 34174390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 15190516 - 15190588
Alignment:
Q  39 aacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggta 111  Q
    |||||||||| ||||||| ||||||||||||| |||||||||||| | |||||||||||||||| ||| ||||    
T  15190516 aacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggta 15190588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 37 - 554
Target Start/End: Complemental strand, 7399262 - 7398739
Alignment:
Q  37 tcaacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggtattgaaatgaacca 136  Q
    |||||| ||| ||||||||| |||| |||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||| ||  ||| |||||    
T  7399262 tcaacgaagtgaaaaactacgaagggacatcacaaccactacttgcagtacaagtaacagagttaatcgatggtatcttcattggttttacaattaacca 7399163  T
Q  137 tgtggttgtagatgccaagtcgttttggcatttcgtcaattcttgggttgaaatctcacatggtttcaataaaccaacaaaaatcccttctttcgaacgc 236  Q
    ||||  |||||| || ||||| |||||||||||| |||| ||||||| ||||||| |||| ||||||||||| ||||||||| | ||||||||||||||     
T  7399162 tgtgtgtgtagacgcgaagtcattttggcatttcatcaactcttgggctgaaatcgcacaaggtttcaataagccaacaaaagttccttctttcgaacgt 7399063  T
Q  237 ttctttccaaacaacattaaccatcccatacggtttcctttcacaaaggaaacacaaagtcaacaatttgaagtatcacatcctcatcgaatcttccact 336  Q
    |  |||||||| ||  |||||| |||||||||||||||||||||||| ||  |||||| |||||||| ||| || ||     || |||||||||||||||    
T  7399062 tggtttccaaataatgttaaccgtcccatacggtttcctttcacaaaagatgcacaaaatcaacaatgtgatgtttc---gtctaatcgaatcttccact 7398966  T
Q  337 tcacaaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaattagta---gtagttgc---ggtggtgataaaataata---atatcttcatt 427  Q
    | || || ||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||    || ||||||||||||||   |||||||||||    
T  7398965 ttactaaagaacaaattctgcaactcaaatcaaaagctaatgcagaaattagtagtggtagtagcaatagtagtgataaaataataacgatatcttcatt 7398866  T
Q  428 gcaagcgcttttaagccacttttggcgtttaactataagtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaatagattgtaggaca 527  Q
    ||||||||||||||| ||| |||||||||||  ||||||||||||||||| |||  |||||||||   |    |||  |||||| ||||||||||| |||    
T  7398865 gcaagcgcttttaagtcacctttggcgtttatttataagtaaacaaaatcgtaattcagaagaaaggtcggcattcgtgttacccatagattgtagaaca 7398766  T
Q  528 agaatgtgtccaaagttagcagagaat 554  Q
    |||||||| |||||||||| |||||||    
T  7398765 agaatgtgcccaaagttagaagagaat 7398739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 319 - 546
Target Start/End: Complemental strand, 39075725 - 39075498
Alignment:
Q  319 ctcatcgaatcttccacttcacaaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaattagtagtagttgcggtggtgataaaataataat 418  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||||||    || |||| |||||||||||    
T  39075725 ctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaatcagtagtagtaatagtagtgagaaaataataat 39075626  T
Q  419 atcttcattgcaagcgcttttaagccacttttggcgtttaactataagtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaatagat 518  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||   |   ||||  |||||| ||||||    
T  39075625 atcttcattgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaaggtctgctttcgtgttacccatagat 39075526  T
Q  519 tgtaggacaagaatgtgtccaaagttag 546  Q
    ||||||||||||||||||||||||||||    
T  39075525 tgtaggacaagaatgtgtccaaagttag 39075498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 55 - 294
Target Start/End: Complemental strand, 39076013 - 39075774
Alignment:
Q  55 acaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggtattgaaatgaaccatgtggttgtagatgccaa 154  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||| |||||| |||||    
T  39076013 acaaaggcacatcacaaccattacttgcagtacaagtaacagagttaatcgatggtatcttcattggttttgcaattaaccatgtgggtgtagacgccaa 39075914  T
Q  155 gtcgttttggcatttcgtcaattcttgggttgaaatctcacatggtttcaataaaccaacaaaaatcccttctttcgaacgcttctttccaaacaacatt 254  Q
    ||| |||||||||||| |||| ||||||| |||||||||||| ||||| ||||| |||||||| |||||||||||| |||| |  ||| |||||||||||    
T  39075913 gtcattttggcatttcatcaactcttgggctgaaatctcacaaggttttaataagccaacaaatatcccttctttcaaacgttggtttacaaacaacatt 39075814  T
Q  255 aaccatcccatacggtttcctttcacaaaggaaacacaaa 294  Q
    |||| ||||||  |||||||||||||||||||| ||||||    
T  39075813 aaccgtcccattaggtttcctttcacaaaggaagcacaaa 39075774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 39098448 - 39098318
Alignment:
Q  48 aaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggtattgaaatgaaccatgtggttgtag 147  Q
    ||||||||| |||| |||||| |||||||||||||||||||||| || ||| |  |||||||||| ||||||||  |   ||| || ||||| ||||| |    
T  39098448 aaaaactacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgttgtcg 39098349  T
Q  148 atgccaagtcgttttggcatttcgtcaattc 178  Q
    |||  |||||||||||||||||| |||||||    
T  39098348 atggtaagtcgttttggcatttcatcaattc 39098318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 39083148 - 39082971
Alignment:
Q  17 agttcactcattatttcatctcaacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttc 116  Q
    |||||||||||| || |  || |||||  ||||||||||| |||  || || |||||| | || ||||| |||||||| ||||||| | | |||||||||    
T  39083148 agttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttaagtaacggtatcttc 39083049  T
Q  117 attggtattgaaatgaaccatgtggttgtagatgccaagtcgttttggcatttcgtcaattcttgggttgaaatctca 194  Q
    |||| | |     | |||||||| ||| |||| | |||||| ||||||||||||||||||||||||  ||||||||||    
T  39083048 attgctttcactgtcaaccatgttgttttagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctca 39082971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 39088802 - 39088697
Alignment:
Q  17 agttcactcattatttcatctcaacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttc 116  Q
    |||||||||||| || |  || |||||||||||||||||| |||  || ||||||||| | || | |||||||||||| ||||||  | |||| ||||||    
T  39088802 agttcactcatttttcccacttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacggagttagctaatggcatcttc 39088703  T
Q  117 attggt 122  Q
    ||||||    
T  39088702 attggt 39088697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 182
Target Start/End: Complemental strand, 39071670 - 39071527
Alignment:
Q  39 aacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggtattgaaatg-aaccat 137  Q
    ||||| |||||||||||| ||| ||| ||| |||||   || ||||| |||||||| ||||||| | ||||  |||||||||  ||| | ||| |||||     
T  39071670 aacggcgttaaaaactacgaagctacgtcaaaaccaactctagcagtccaagtaacggagttaagtaatggcgtcttcattga-attcacatgcaaccac 39071572  T
Q  138 gtggttgtagatgccaagtcgttttggcatttcgtcaattcttgg 182  Q
     | |||| ||| |||||||| ||||||||||||||||||||||||    
T  39071571 attgttgcagacgccaagtcattttggcatttcgtcaattcttgg 39071527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 7637838 - 7637774
Alignment:
Q  58 aaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 122  Q
    |||| |||||| |||||||| | |||||||||||||| ||| || |||| ||||| |||||||||    
T  7637838 aaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggt 7637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 5219 - 5068
Alignment:
Q  42 ggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggtattgaaatgaaccatgtgg 141  Q
    ||||||||||||||| |||| |||||||||||||| |||||| | |||||||| |||||| |||| || |||||||||||  |   | | ||||| |||     
T  5219 ggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaacggagttagttgacggcatcttcattggcttcacagttaaccacgtga 5120  T
Q  142 ttgtagatgccaagtcgttttggcatttcgtcaattcttgggttgaaatctc 193  Q
    |||| ||||  | |||||||||||||||| ||||||| |||| |||||||||    
T  5119 ttgttgatggtacgtcgttttggcatttcatcaattcgtgggctgaaatctc 5068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 11969716 - 11969616
Alignment:
Q  21 cactcattatttcatctcaacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattg 120  Q
    |||||||| ||||  || |||||||||| ||||||  |||| |||||| | |||||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  11969716 cactcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattg 11969617  T
Q  121 g 121  Q
    |    
T  11969616 g 11969616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 6501312 - 6501235
Alignment:
Q  24 tcattatttcatctcaacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagtta 101  Q
    ||||| |||| | ||||||| | || ||||||| |||| | |||| |||||||||||||||| ||||| |||||||||    
T  6501312 tcattttttcctttcaacggggctagaaactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagtta 6501235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 8934503 - 8934572
Alignment:
Q  53 ctacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 122  Q
    |||| |||| |||||| |||||||| | |||||||||||||| ||||||||||| ||||| |||||||||    
T  8934503 ctacgaaggcacatcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggt 8934572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 8935444 - 8935513
Alignment:
Q  53 ctacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 122  Q
    |||| |||| |||||| |||||||| | |||||||||||||| ||||||||||| ||||| |||||||||    
T  8935444 ctacgaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggt 8935513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 8930058 - 8930117
Alignment:
Q  63 acatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 122  Q
    |||||| |||||||| | ||| |||||||||| ||||||||||| ||||| |||||||||    
T  8930058 acatcaaaaccattgttggcatttcaagtaactgagttaattgacggtattttcattggt 8930117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 8103266 - 8103183
Alignment:
Q  39 aacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 122  Q
    |||||| | ||||||||| |||| ||||||||||||||| |||| || ||||| ||||||||| |||| || ||||| ||||||    
T  8103266 aacggaatcaaaaactacgaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggt 8103183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 40146722 - 40146801
Alignment:
Q  43 gagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 122  Q
    |||||||||| ||| |||| ||||||||||||||| | || || ||||| ||||||||| |||| ||  |||||||||||    
T  40146722 gagttaaaaattacgaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggt 40146801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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