View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_30 (Length: 242)
Name: NF4175_low_30
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43865150 - 43865391
Alignment:
| Q |
1 |
taattaaagcacactaaccacttgagtcaaaccacttcattggagtgttgattcagtaaagttgaattcttcaatttaacaatacatnnnnnnnncttat |
100 |
Q |
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| T |
43865150 |
taattaaagcacactaaccacttgagtcaaaccacttcattggagtgttgatttagtaaagttgaattcttcaatttaacaatacataaaaaaaacttat |
43865249 |
T |
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| Q |
101 |
aactaacaagtgatttgatggtatttgtaacttcaatatcgctcgaggataaagcgcaatctgaaccaaggacaaactcatgagtttcgtacaaggtaca |
200 |
Q |
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| T |
43865250 |
aactaacaagtgatttgatggtatttgtaacttcaatatcgctcgaggataaagcataatctgaaccaaggacaaactcatgagtttcgtacaaggtaca |
43865349 |
T |
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| Q |
201 |
ataatttctataccaaatttaaaataaaagcattgatgaatt |
242 |
Q |
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| T |
43865350 |
ataatttctataccaaatttaaaataaaagcattgatgaatt |
43865391 |
T |
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