View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_31 (Length: 240)
Name: NF4175_low_31
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_31 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7123576 - 7123346
Alignment:
| Q |
1 |
tcaattttcgattactattggtatgtttgcagccaatctggcaaactattactgtgccaagttatggaatggtgagggatggcgattaagcttggggcta |
100 |
Q |
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| T |
7123576 |
tcaattttcgattactattggtatgtttgcagccaatctggcaaactattactgtgccaagttatggaatggtgagggatggcgattaagcttggggcta |
7123477 |
T |
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| Q |
101 |
ggtgcggtacctgcggtgattttcgttgtaggcacactttttcttcctgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaagg |
200 |
Q |
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| T |
7123476 |
ggtgcggtacctgcggtgattttcgttgtaggcacactttttcttcctgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaagg |
7123377 |
T |
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| Q |
201 |
agcttgcaaaaattcgcggtactgatgatgt |
231 |
Q |
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| T |
7123376 |
agcttgcaaaaattcgcggtactgatgatgt |
7123346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 187398 - 187168
Alignment:
| Q |
1 |
tcaattttcgattactattggtatgtttgcagccaatctggcaaactattactgtgccaagttatggaatggtgagggatggcgattaagcttggggcta |
100 |
Q |
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|||||| || ||||| |||||||| ||| |||||||| || |||||||||| | ||||| || ||||||||||||||||||||||| ||||||||| |
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| T |
187398 |
tcaattgtcaattaccattggtatttttacagccaatatgttcaactattacttttccaagatactaaatggtgagggatggcgattaagtttggggcta |
187299 |
T |
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| Q |
101 |
ggtgcggtacctgcggtgattttcgttgtaggcacactttttcttcctgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaagg |
200 |
Q |
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| T |
187298 |
ggtgcggtacctgcagtggttttcattataggctcaatttgtcttcctgattcgccaaactcgcttgttacacgtggtcgtcacgaagaagcaagaaagg |
187199 |
T |
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| Q |
201 |
agcttgcaaaaattcgcggtactgatgatgt |
231 |
Q |
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| T |
187198 |
agcttgtgaaaatccgcggtactgatgatgt |
187168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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