View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_34 (Length: 236)
Name: NF4175_low_34
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 33235020 - 33234832
Alignment:
| Q |
33 |
aagacatagagagtgacacaacagaaccgaccactctagtttgttcaagtataagaacaaaattatggcttgatttgaatnnnnnnnttgactgattgaa |
132 |
Q |
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| T |
33235020 |
aagacatagagagtgacacaacagaaccgaccactctagtttgttcaagtataagaacaaaattatggcttgatttgaataaaaaaattgactgattgaa |
33234921 |
T |
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| Q |
133 |
gtgtctgaaaatatagaaaggacatgagagttaaataattgacaatgtaaatgtcttaagttccttgctttctttgactttacatatat |
221 |
Q |
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| T |
33234920 |
gtgtctgaaaatatagaaaggacatgagagttaaataattgacaatgtaaatgtcttaagttccttgctttctttgactttacatatat |
33234832 |
T |
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