View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4175_low_8 (Length: 439)

Name: NF4175_low_8
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4175_low_8
NF4175_low_8
[»] chr7 (1 HSPs)
chr7 (17-425)||(23206057-23206465)
[»] chr3 (2 HSPs)
chr3 (15-423)||(23426054-23426462)
chr3 (119-423)||(11587653-11587957)
[»] chr6 (2 HSPs)
chr6 (15-423)||(24892028-24892436)
chr6 (116-385)||(24988952-24989221)
[»] chr1 (3 HSPs)
chr1 (116-231)||(46056090-46056205)
chr1 (152-198)||(10102015-10102061)
chr1 (120-190)||(50455796-50455866)
[»] chr8 (1 HSPs)
chr8 (134-196)||(40730514-40730576)
[»] chr4 (1 HSPs)
chr4 (116-190)||(3883495-3883569)


Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 23206057 - 23206465
Alignment:
Q  17 actgccatgcgaaaaccttccaggattgccgtcagttcagcttggagaatgcatattgatgtctggataaacccggaaaacccattgaggtagtaccctg 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  23206057 actgccatgcgaaaaccttccaggattgctgtcagttcagcttggagaatgcatattgatgtctgaataaacccagaaaacccattgaggtagtgccctg 23206156  T
Q  117 cgctgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatgtggcagttaaattttctgctattcca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23206157 cgctgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatgtggcagttaaattttctgctattcca 23206256  T
Q  217 tgaaatccagcgatcgggaccagctgtaatggcagcagattgaaagctctttttgattatttctgttgagttctggatgttgatactcaaacgcgtgaga 316  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23206257 tgaaatccagcgttcaggaccagctgtaatggcagcagattgaaagctctttttgattatttctgttgagtgctggatgttgatactcaaacgcgtgaga 23206356  T
Q  317 gaccagacgccgttattgtaacacatgttgtttcggtgcagccaaatccaccaaagagaggccaggaagttgatggacctgctgctgtcaacgttgctct 416  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23206357 gaccaggcgtcgttattgaaacacatgttgtttcggtgcagccaaatccaccaaagagaggccaggaagttgatggacctgctgctgtcaacgttgctct 23206456  T
Q  417 ttatccaca 425  Q
    |||||||||    
T  23206457 ttatccaca 23206465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 15 - 423
Target Start/End: Complemental strand, 23426462 - 23426054
Alignment:
Q  15 tcactgccatgcgaaaaccttccaggattgccgtcagttcagcttggagaatgcatattgatgtctggataaacccggaaaacccattgaggtagtaccc 114  Q
    |||| ||||||||||||||||| || ||||| |||||||||||||||||||||||| |||||| ||| ||||| ||||||||||| || ||  |  ||||    
T  23426462 tcaccgccatgcgaaaaccttcaagaattgcggtcagttcagcttggagaatgcatgttgatgcctgaataaaaccggaaaacccctttagaaaaaaccc 23426363  T
Q  115 tgcgctgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatgtggcagttaaattttctgctattc 214  Q
     ||| ||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  23426362 cgcgttgttgcggattaaacctccataaccggcacgtattggagtgccaagacagctgccatctacattgagaatgtggcaattataatttctgctattc 23426263  T
Q  215 catgaaatccagcgatcgggaccagctgtaatggcagcagattgaaagctctttttgattatttctgttgagttctggatgttgatactcaaacgcgtga 314  Q
    ||||||||||||||||| |||||||| ||||||||||  || ||||| |||||  ||||| ||||||||||||| |||||| | || |||||||||||||    
T  23426262 catgaaatccagcgatcaggaccagcagtaatggcagtggactgaaaactcttagtgattgtttctgttgagttatggatgctaatgctcaaacgcgtga 23426163  T
Q  315 gagaccagacgccgttattgtaacacatgttgtttcggtgcagccaaatccaccaaagagaggccaggaagttgatggacctgctgctgtcaacgttgct 414  Q
    ||||||||||  |||||||| ||||||||||||| | |||||||||||||||||||||||| ||||| ||| |||| || | |||||||||||| |||||    
T  23426162 gagaccagacctcgttattgaaacacatgttgttgcagtgcagccaaatccaccaaagagaagccagaaagatgattgagcggctgctgtcaacattgct 23426063  T
Q  415 ctttatcca 423  Q
     ||||||||    
T  23426062 ttttatcca 23426054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 119 - 423
Target Start/End: Original strand, 11587653 - 11587957
Alignment:
Q  119 ctgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatgtggcagttaaattttctgctattccatg 218  Q
    |||||||| ||||| |||||||||| ||| || |||||||||||||||||||||||||| |||||||| |||||||| ||| | ||| || |||||||||    
T  11587653 ctgttgcggattaaacctccataactggcacgaattggagtgccaagacagctgccatcgacattgaggatgtggcaattataatttatgttattccatg 11587752  T
Q  219 aaatccagcgatcgggaccagctgtaatggcagcagattgaaagctctttttgattatttctgttgagttctggatgttgatactcaaacgcgtgagaga 318  Q
    |||| |||||||||| |||||| | |||| |||| || ||||| |||||||||||| |||| | |||||| |||||| ||||  ||||||||||||||||    
T  11587753 aaattcagcgatcggaaccagcagcaatgacagcggactgaaaactctttttgattgtttcggctgagttatggatgctgatgttcaaacgcgtgagaga 11587852  T
Q  319 ccagacgccgttattgtaacacatgttgtttcggtgcagccaaatccaccaaagagaggccaggaagttgatggacctgctgctgtcaacgttgctcttt 418  Q
    ||| ||  |||||||| | |||| |||||| |||||||||||||||||||||||||| ||||| ||| |||| || | | |||||||||||||| | |||    
T  11587853 ccatacctcgttattgaagcacaagttgttgcggtgcagccaaatccaccaaagagaagccagaaagatgattgaacggttgctgtcaacgttgtttttt 11587952  T
Q  419 atcca 423  Q
    |||||    
T  11587953 atcca 11587957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 15 - 423
Target Start/End: Original strand, 24892028 - 24892436
Alignment:
Q  15 tcactgccatgcgaaaaccttccaggattgccgtcagttcagcttggagaatgcatattgatgtctggataaacccggaaaacccattgaggtagtaccc 114  Q
    |||| ||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||| ||| |||   ||||||||||| || ||  |  ||||    
T  24892028 tcaccgccatgcgaaaaccttcaagaattgcggtcagttcagcttggagaatacatgttgatgcctgaatatgaccggaaaacccctttagaaaaaaccc 24892127  T
Q  115 tgcgctgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatgtggcagttaaattttctgctattc 214  Q
     ||||||||||  ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||  | |||||||| |||    
T  24892128 cgcgctgttgcagattaaacctccatagccggcacgtattggagtgccaagacagctgccatctacattgaggatgtggcaattgtaatttctgctgttc 24892227  T
Q  215 catgaaatccagcgatcgggaccagctgtaatggcagcagattgaaagctctttttgattatttctgttgagttctggatgttgatactcaaacgcgtga 314  Q
    || |||||||||||||| |  ||||| |||||||| || || |||||||||||| ||||| ||||||||||||| |||||| | || ||||| |||||||    
T  24892228 caagaaatccagcgatcagtgccagcagtaatggccgcggactgaaagctctttatgattgtttctgttgagttatggatgctaatgctcaaccgcgtga 24892327  T
Q  315 gagaccagacgccgttattgtaacacatgttgtttcggtgcagccaaatccaccaaagagaggccaggaagttgatggacctgctgctgtcaacgttgct 414  Q
    ||||||||||  |||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||   ||| || | |||||||||||| |||||    
T  24892328 gagaccagacctcgttgttgaaacacatgttgttgcggtgcagccaaatccaccacagagaggccagaaaaaagattgagcggctgctgtcaacattgct 24892427  T
Q  415 ctttatcca 423  Q
     ||||||||    
T  24892428 ttttatcca 24892436  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 116 - 385
Target Start/End: Original strand, 24988952 - 24989221
Alignment:
Q  116 gcgctgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatgtggcagttaaattttctgctattcc 215  Q
    ||||||||||| ||||| ||||||||||| || ||  |||| ||||||||||||||||| || |||||||| |||||||| ||||| |||||||| ||||    
T  24988952 gcgctgttgcgtattaagcctccataaccagcacgagttggtgtgccaagacagctgccgtcgacattgaggatgtggcaattaaaatttctgcttttcc 24989051  T
Q  216 atgaaatccagcgatcgggaccagctgtaatggcagcagattgaaagctctttttgattatttctgttgagttctggatgttgatactcaaacgcgtgag 315  Q
    |||||||||| ||||| | |||||| | |||| || ||| |||||| |  ||||||||   ||| | |||||| | |||| |||   ||||| |||||||    
T  24989052 atgaaatccatcgatctgaaccagcagcaatgacaacagtttgaaaaccttttttgatggcttcggctgagttatagatgctgactttcaaatgcgtgag 24989151  T
Q  316 agaccagacgccgttattgtaacacatgttgtttcggtgcagccaaatccaccaaagagaggccaggaag 385  Q
     ||||| ||  |||| ||| | ||||||||||||||||||| |||| ||||||||||||| |||||||||    
T  24989152 ggaccatacatcgttgttgaagcacatgttgtttcggtgcaaccaactccaccaaagagaagccaggaag 24989221  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 46056090 - 46056205
Alignment:
Q  116 gcgctgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatgtggcagttaaattttctgctattcc 215  Q
    |||||||| || ||||| |||||||||||  | ||  |||| |||||||||||||| |  || |||||||||||||||||||| || |||||||||||||    
T  46056090 gcgctgttacgtattaagcctccataaccaacacgagttggtgtgccaagacagcttctgtcgacattgagaatgtggcagttgaaatttctgctattcc 46056189  T
Q  216 atgaaatccagcgatc 231  Q
    |||||||||| |||||    
T  46056190 atgaaatccaccgatc 46056205  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 10102015 - 10102061
Alignment:
Q  152 attggagtgccaagacagctgccatctacattgagaatgtggcagtt 198  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10102015 attggagtgccaaggcagttgccatctacattgagaatgtggcagtt 10102061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 50455866 - 50455796
Alignment:
Q  120 tgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatg 190  Q
    ||||||| | || ||||||| |||| || |||||||| |||||||||||||| ||||| ||||||||||||    
T  50455866 tgttgcgtagtattcctccaaaaccagctcggattggcgtgccaagacagctcccatcgacattgagaatg 50455796  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 40730576 - 40730514
Alignment:
Q  134 cctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatgtggcag 196  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  40730576 cctccataaccggctcggattggagttccaaggcagctgccatctacattgaggatgtggcag 40730514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 3883569 - 3883495
Alignment:
Q  116 gcgctgttgcgaattaatcctccataaccggcgcggattggagtgccaagacagctgccatctacattgagaatg 190  Q
    |||||||||||||  | |||||||||||| || |||||||| |||||||||||||| ||||| || |||||||||    
T  3883569 gcgctgttgcgaagaattcctccataacccgctcggattggtgtgccaagacagctcccatcgacgttgagaatg 3883495  T

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