View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4175_low_9 (Length: 430)
Name: NF4175_low_9
Description: NF4175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4175_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 6286675 - 6286807
Alignment:
| Q |
18 |
agttttgattattctctctatggtagttgttacaatattgattcttcactgctgatttttgtccatttctattgttcatgaagttatctctattatactc |
117 |
Q |
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| T |
6286675 |
agttttgattattctctctatggtagttgttacaatattgattcttcactgctggtttttgtccatttctattgttcatgaagttatctctattatactc |
6286774 |
T |
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| Q |
118 |
agttatgtgatcgttcggagccatggattctat |
150 |
Q |
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| T |
6286775 |
agttatgtgatcgttcagagccatgaattctat |
6286807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 6286982 - 6287072
Alignment:
| Q |
334 |
caagcatcaatcaattcgagcattatttgatgtatacgttcacattctctatcaaagcaacacttgagcgtttctcatatcttcttctctc |
424 |
Q |
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| T |
6286982 |
caagcatcaatcaattcgagcattatttgatgtatacgttcacattctctatcaaagcagcacttgagcgtttctcatatcttcttctctc |
6287072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 6286825 - 6286913
Alignment:
| Q |
177 |
ttgtagttgtcatatatggttaaacatttcgtatcccgtttacatcaatcgtgacttgagttgcctctcttaatctattttatatatat |
265 |
Q |
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| T |
6286825 |
ttgtagttgtcatataaggttaaacatttcgtatcccgtttacatcaatcgtgacttgagttgcctctcttaatctattttatatatat |
6286913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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