View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4176_high_2 (Length: 235)
Name: NF4176_high_2
Description: NF4176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4176_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7834686 - 7834472
Alignment:
| Q |
1 |
ccaatgtgaagtgtgaagttgtatgcctatcaggaaccgaagttgaagcctgttgaagatctggaaatagggtcaacggtggtgcgaatggtgattctca |
100 |
Q |
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| T |
7834686 |
ccaatgtgaagtgtgaagttgtatgcctatcaggaaccgaagttgaagcctgttgaagatctggaaatagggtcaacggtggtgcgaatggtgattctca |
7834587 |
T |
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| Q |
101 |
tcgcaccaccattcatgtagtctacattggaaaaaatatgctttaaacttaagcggggagatgcgtccgtaaaaaggttagatgtagagaggtcaagaga |
200 |
Q |
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| T |
7834586 |
tcgcaccaccactcatgtagtctacattggaaaaaatatgctttaaacttaagcggggagatgcgtccgtagaaaggttagatgtagagaggccaagaga |
7834487 |
T |
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| Q |
201 |
aattttctggagaga |
215 |
Q |
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| T |
7834486 |
aattttctggagaga |
7834472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 7863522 - 7863395
Alignment:
| Q |
63 |
ggaaatagggtcaacggtggtgcgaatggtgattctcatcgcaccaccattcatgtagtctacattggaaaaaatatgctttaaacttaagcggggagat |
162 |
Q |
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| T |
7863522 |
ggaaatagggtcaatggtggtgcggagagtgattctcatcgcaccaccactcgtgtagtctacattggacaaaagatgctttaaatttgaggggagaggc |
7863423 |
T |
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| Q |
163 |
gcgtccgtaaaaaggttagatgtagaga |
190 |
Q |
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| T |
7863422 |
gcggacgtaaaaaggttagatgtagaga |
7863395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 31051774 - 31051838
Alignment:
| Q |
63 |
ggaaatagggtcaacggtggtgcgaatggtgattctcatcgcaccaccattcatgtagtctacat |
127 |
Q |
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| T |
31051774 |
ggaaagaggctcaccggtggtgcggatagtgaatctcgtcgcaccaccactcatgtagtctacat |
31051838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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