View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_high_1 (Length: 457)
Name: NF4177_high_1
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 6301768 - 6301326
Alignment:
| Q |
1 |
caccttacgtgcatcatcaattcttccacaaacacaataaaattgcaaaattgtattattcaaatcaacaaaaaacctattcccagacttcacaacaatc |
100 |
Q |
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| T |
6301768 |
caccttacgtgcatcatcaattcttccacaaacacaataaaattgcaaaattgtattattcaaatcaacaaaaaacctattcccagacttcacaacaatc |
6301669 |
T |
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| Q |
101 |
ccatgaacccctctaccaaacccaacctcaaaacttcttccacaagctttcatcaccgcgatgaacgaaaacgggtcaagcccatttccactattcctaa |
200 |
Q |
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| T |
6301668 |
ccatgaacccctctaccaaacccaacctcaaaacttcttccacaagctttcatcaccgcgatgaacgaaaacgggtcaagcccatttccactattcctaa |
6301569 |
T |
|
| Q |
201 |
gcttattaaaaatgggtaaagctttatttgaagaattactaacggaatagcctctaagcattgtattatacatgaaaagattagggttttgaatgcaagt |
300 |
Q |
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| T |
6301568 |
gcttattaaaaatgggtaaagctttatttgaagaattactaacggaatagcctctaagcattgtattatacatgaaaagattagggttttgaatgcaagt |
6301469 |
T |
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| Q |
301 |
gaaaatggaggaagcgtagttcatgtcgaaaattgacgcagcgagaagcttgcttagagtgaaaggaacgttggtgagtgaagttttgatcatgtagcaa |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6301468 |
gaaaatggtggaagcgtagttcatgtcgaaaattgacgcagcgagaagcttgcttagagtgaaaggaacgttggtgagtgaagttttgatcatgtagcaa |
6301369 |
T |
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| Q |
401 |
tgaaattgatgaatttcggtgatggttttgcatgattttaatg |
443 |
Q |
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| T |
6301368 |
tgaaattgatgaatttcggtgatggttttgcatgattttaatg |
6301326 |
T |
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