View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4177_high_10 (Length: 266)

Name: NF4177_high_10
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4177_high_10
NF4177_high_10
[»] chr7 (2 HSPs)
chr7 (14-109)||(31922472-31922567)
chr7 (170-226)||(31922356-31922412)
[»] chr2 (2 HSPs)
chr2 (183-224)||(17906196-17906237)
chr2 (18-59)||(17905490-17905531)
[»] chr1 (1 HSPs)
chr1 (18-76)||(17109147-17109205)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 31922567 - 31922472
Alignment:
Q  14 gagaaaggaaggcatcaaggagaagctagacatcccaactagattgacaatccatagctgctcccattttctgccatttgctttgaaattttattg 109  Q
    |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  31922567 gagaaaggaaggcatcaaggagaagctagatatgccaactagattggcaatccatagctgctcccatcttctgccatctgctttgaaattttattg 31922472  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 31922412 - 31922356
Alignment:
Q  170 gagggaactatgagaatctaaaattcggaagaccatgtttgtccctgtaaaaatcgt 226  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  31922412 gagggaactatgggaatctaaaattcggaagaccatgtttgttcctgtgaaaatcgt 31922356  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 17906196 - 17906237
Alignment:
Q  183 gaatctaaaattcggaagaccatgtttgtccctgtaaaaatc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17906196 gaatctaaaattcggaagaccatgtttgtccctgtaaaaatc 17906237  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 17905490 - 17905531
Alignment:
Q  18 aaggaaggcatcaaggagaagctagacatcccaactagattg 59  Q
    |||||| |||| ||||||||| ||||||||||||||||||||    
T  17905490 aaggaaagcataaaggagaagatagacatcccaactagattg 17905531  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 17109205 - 17109147
Alignment:
Q  18 aaggaaggcatcaaggagaagctagacatcccaactagattgacaatccatagctgctc 76  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||   |||||||||||    
T  17109205 aaggaatgcatcaaagagaagctagacatcccaactagattgacaccacatagctgctc 17109147  T

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