View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_high_13 (Length: 252)
Name: NF4177_high_13
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1696151 - 1696392
Alignment:
| Q |
1 |
aaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactga |
100 |
Q |
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| T |
1696151 |
aaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactga |
1696250 |
T |
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| Q |
101 |
actaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaataaactgaa |
200 |
Q |
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| T |
1696251 |
actaaaaacttccaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataaactgaa |
1696350 |
T |
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| Q |
201 |
atgatactgaaaagagaagaagaagtgattaacaaacctatg |
242 |
Q |
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| T |
1696351 |
atgatactgaaaagagaagaagaagtgattaacaaacctatg |
1696392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1685602 - 1685835
Alignment:
| Q |
1 |
aaacgagataacattccctgcattcaaa-tttcacaaaa--atcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaac |
97 |
Q |
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||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1685602 |
aaacgagataacattcccttcattcaaaatttcagaaaaaaatcaatcagaaacatgtatgattaatcgattaacacaaaaagctaaaatcaatcgtaac |
1685701 |
T |
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| Q |
98 |
tgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaataaact |
197 |
Q |
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| T |
1685702 |
tgaactaaaaacttcaaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataa--- |
1685798 |
T |
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| Q |
198 |
gaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
242 |
Q |
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| T |
1685799 |
--------actgaaaagagaagaagaagtgattaacaaacctatg |
1685835 |
T |
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