View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4177_high_14 (Length: 251)

Name: NF4177_high_14
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4177_high_14
NF4177_high_14
[»] chr1 (8 HSPs)
chr1 (108-242)||(49683100-49683234)
chr1 (100-238)||(49688010-49688148)
chr1 (100-242)||(49714351-49714493)
chr1 (108-242)||(49710709-49710844)
chr1 (114-242)||(49215372-49215500)
chr1 (114-242)||(49728548-49728676)
chr1 (108-242)||(49725126-49725260)
chr1 (41-95)||(49726275-49726329)
[»] chr6 (2 HSPs)
chr6 (120-223)||(31189573-31189676)
chr6 (141-222)||(31214205-31214286)
[»] scaffold0394 (1 HSPs)
scaffold0394 (130-180)||(2115-2165)
[»] chr7 (3 HSPs)
chr7 (105-175)||(33305159-33305229)
chr7 (130-166)||(31608433-31608469)
chr7 (132-180)||(31618445-31618493)
[»] chr4 (1 HSPs)
chr4 (130-180)||(15063369-15063419)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 49683234 - 49683100
Alignment:
Q  108 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 207  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||||||||||||||||||||    
T  49683234 gatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatcatcgtcaagtaatatattatgaggttttatgt 49683135  T
Q  208 caaaatgtaatattctagtgttgcagcctctgtgc 242  Q
    |||||||||| ||||||||||||||||||||||||    
T  49683134 caaaatgtaagattctagtgttgcagcctctgtgc 49683100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 49688148 - 49688010
Alignment:
Q  100 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 199  Q
    |||| |||||||| || |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  49688148 caaatatggatacaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaattctcatcaagtaatatattatgagg 49688049  T
Q  200 ttttatgtcaaaatgtaatattctagtgttgcagcctct 238  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  49688048 ttttatgtcaaaatgtaagattctagtgttgcagcctct 49688010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 49714493 - 49714351
Alignment:
Q  100 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 199  Q
    |||| |||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||||    
T  49714493 caaatatggatacaatgctttcttttcttggacatactttagcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgagg 49714394  T
Q  200 ttttatgtcaaaatgtaatattctagtgttgcagcctctgtgc 242  Q
    ||| |||||||||||||| ||||||||||| ||||||||||||    
T  49714393 tttaatgtcaaaatgtaagattctagtgttacagcctctgtgc 49714351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 49710844 - 49710709
Alignment:
Q  108 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcc-tcatgaagtaatatattatgaggttttatg 206  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||   ||||  ||||||||||||||||||||||||    
T  49710844 gatacaatgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatg 49710745  T
Q  207 tcaaaatgtaatattctagtgttgcagcctctgtgc 242  Q
    |||||||| || ||||||||||||||||||||||||    
T  49710744 tcaaaatgcaagattctagtgttgcagcctctgtgc 49710709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 49215500 - 49215372
Alignment:
Q  114 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 213  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||   |||||||||||||||||| ||||||||||||    
T  49215500 atactttcttttcttgggcatattttagcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaat 49215401  T
Q  214 gtaatattctagtgttgcagcctctgtgc 242  Q
    | || ||||||||||| ||||||||||||    
T  49215400 gcaagattctagtgttacagcctctgtgc 49215372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 49728676 - 49728548
Alignment:
Q  114 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 213  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||  || || || ||||| || |  || |||||||||||||||||||| |||||||    
T  49728676 atactttcttttcttggacatacttttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaat 49728577  T
Q  214 gtaatattctagtgttgcagcctctgtgc 242  Q
    |||| ||| |||| ||||| ||| |||||    
T  49728576 gtaaaattttagtattgcaacctttgtgc 49728548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 49725260 - 49725126
Alignment:
Q  108 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 207  Q
    ||||| ||||||||||||||||  || ||||| |||||||||||||| |||||| | |||  ||||| |||||  |  |  || ||||||||||||||||    
T  49725260 gataccatactttcttttcttgtgcaaatttttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgt 49725161  T
Q  208 caaaatgtaatattctagtgttgcagcctctgtgc 242  Q
    ||||||| || |||||||| ||||||||| |||||    
T  49725160 caaaatgcaaaattctagtattgcagcctttgtgc 49725126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 49726329 - 49726275
Alignment:
Q  41 aaggtcataataggacaagtcaacagtcaacagtggactatcttagtgtatatat 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  49726329 aaggtcataataggaaaagtcaacagtcaacagtggactatcttagtatatatat 49726275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 31189573 - 31189676
Alignment:
Q  120 tcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaata 219  Q
    |||||| ||||||| | ||| |||||||||||||||||||||||||| || |||| |||||  |  |  || ||||| ||||||||||| |||||||| |    
T  31189573 tctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaa 31189672  T
Q  220 ttct 223  Q
    ||||    
T  31189673 ttct 31189676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 31214286 - 31214205
Alignment:
Q  141 gcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattc 222  Q
    ||||||||||||||||| || ||||| || ||||  ||||  | ||| |||||||| |||||||| ||||||||||| ||||    
T  31214286 gcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgtaaaattc 31214205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 2115 - 2165
Alignment:
Q  130 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 180  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  2115 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 33305229 - 33305159
Alignment:
Q  105 atggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatc 175  Q
    |||||||| || || || || ||| ||||||||| ||| |||||||||||||| ||||||||||| |||||    
T  33305229 atggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatc 33305159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 31608433 - 31608469
Alignment:
Q  130 gacatattttagcaagtccaaaatctgaaatttttgg 166  Q
    ||||||||||||||||||||||||| || ||||||||    
T  31608433 gacatattttagcaagtccaaaatcagatatttttgg 31608469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 31618445 - 31618493
Alignment:
Q  132 catattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 180  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| ||||    
T  31618445 catattttagctagtccaaaatctgagatttttggacaaaaatcttcat 31618493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 15063419 - 15063369
Alignment:
Q  130 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 180  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  15063419 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 15063369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University