View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4177_high_2 (Length: 437)
Name: NF4177_high_2
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 11001196 - 11000785
Alignment:
| Q |
19 |
ctgaaatggaagcataccagtgataagctcccagagaacaatcccaaagctatatacatccactttatgtgtgtaaggcctatgttggatcatctccgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11001196 |
ctgaaatggaagcataccagtgataagctcccagagaacaatcccaaaactatatacatccactttatgtgtgtaaggcctatgttggatcatctccgga |
11001097 |
T |
|
| Q |
119 |
gccatccaacggtatgttccagtctcgggagtcattccttcagtgtgcacctcaatccgagccactccaaagtcagcaattttgattgacttgtcaccaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11001096 |
gccatccaacggtatgttccagtctcgggagtcattccttcagtgtgcacctcaatccgagccactccaaagtcagcaattttgattgacttgtcaccaa |
11000997 |
T |
|
| Q |
219 |
aaatcaataggttgtcagatttcaagtccctgtgaatcaaccctagaccatgaacataagccatgcctcttgcaacatccaaagcttgtttgacagcttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11000996 |
aaatcaataggttgtcagatttcaagtccctgtgaatcaaccctagaccatgaacataagccatgcctcttgcaacatccaaagcttgtttgacagcttg |
11000897 |
T |
|
| Q |
319 |
tttaaggggaactgctcggttttgacgctggtttaagaactgtcgaactgatccacccttagcatactcagtaacgatgcaccagaccataggtttacgg |
418 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11000896 |
tttaaggggaactgctcggttttgacgttggtttaagaactgtcgaactgatccacccttagcatactcagtaacgatgcaccagaccataggtttacgg |
11000797 |
T |
|
| Q |
419 |
catgcacctatg |
430 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11000796 |
catgcacctatg |
11000785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 115 - 430
Target Start/End: Original strand, 42403502 - 42403817
Alignment:
| Q |
115 |
cggagccatccaacggtatgttccagtctcgggagtcattccttcagtgtgcacctcaatccgagccactccaaagtcagcaattttgattgacttgtca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
42403502 |
cggagccatccaacggtatgttccagtctcgggagtcattccttcagtttgcacctcaatccgagctactccaaagtcggcaattttgattgacttgtca |
42403601 |
T |
|
| Q |
215 |
ccaaaaatcaataggttgtcagatttcaagtccctgtgaatcaaccctagaccatgaacataagccatgcctcttgcaacatccaaagcttgtttgacag |
314 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42403602 |
ccaaaaatcaaaaggttgtcggatttcaagtccctgtggatcaatcccagaccatgaacatatgccatgcctcttgcaacatccaaagcttgtttgacag |
42403701 |
T |
|
| Q |
315 |
cttgtttaaggggaactgctcggttttgacgctggtttaagaactgtcgaactgatccacccttagcatactcagtaacgatgcaccagaccataggttt |
414 |
Q |
| |
|
|| |||| |||||||||| ||||||||| |||| | |||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
42403702 |
ctagtttgaggggaactgatcggttttggcgcttggttaagaactgccgaacagatccacccttagcatactcagtaacaatgcaccacaccataggttt |
42403801 |
T |
|
| Q |
415 |
acggcatgcacctatg |
430 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42403802 |
acggcatgcacctatg |
42403817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 42401772 - 42401868
Alignment:
| Q |
19 |
ctgaaatggaagcataccagtgataagctcccagagaacaatcccaaagctatatacatccactttatgtgtgtaaggcctatgttggatcatctcc |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42401772 |
ctgaaatggaagcataccagtgatgagctcccagagaacaatcccaaagctatatacatccactttctgtgtgtaaggcctatgttggatcatctcc |
42401868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University