View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_high_6 (Length: 360)
Name: NF4177_high_6
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 242941 - 243272
Alignment:
| Q |
11 |
cacagatagggccaaaactatctgttgcagataaagtttggagtgttttaacttcaatgggaaacatagctcttgctagcacttacgctatggttattta |
110 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242941 |
cacaaatagggccagaactatctgttgcagataaagtttggagtgttttaacttcaatgggaaacatagctcttgctagcacttacgctatggttattta |
243040 |
T |
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| Q |
111 |
cgacataatggtaacatatcacagttcattttttataatcattattaaaagcaaataaaaagatgtagtaacaagttggatttttctgttattacccttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243041 |
cgacataatggtaacatatcacagttcattttttataatcattattaaaagcaaataaaaagatgtagtaacaagttggatttttctgttattacccttg |
243140 |
T |
|
| Q |
211 |
tatttgatttatttcgttattttgtttaggatacattaaggtcacatccaccagaaaataaacaaatgaaaagggctaacgtgataggggtatcaacaat |
310 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243141 |
tatttgatttattttgttattttgtttaggatacattaaggtcacatccagcagaaaataaacaaatgaaaagggctaacgtgataggggtatcaacaat |
243240 |
T |
|
| Q |
311 |
gacgataatattcctactatgcagttgccttg |
342 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
243241 |
gacgataatattcctactatgcagttgccttg |
243272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 222326 - 222002
Alignment:
| Q |
11 |
cacagatagggccaaaactatctgttgcagataaagtttggagtgttttaacttcaatgggaaacatagctcttgctagcacttacgctatggttattta |
110 |
Q |
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|||| ||||||||| ||||| ||| |||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
222326 |
cacaaatagggccagaactaactgctgcagagaaagtgtggcgtgtttgcacttcaatgggaaacatagctcttgctagcacttatgctactgttattta |
222227 |
T |
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| Q |
111 |
cgacataatggtaacatatcacagttcattttttataatcattattaaaagcaaataaaaagatgtagtaacaagttggatttttctgttattacccttg |
210 |
Q |
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|||||||||||||| || |||| |||| || ||||||||||||| | | || || || |||||||||||||||||||| ||||||||||||| |
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| T |
222226 |
cgacataatggtaaactaccacaattcacttactataatcattattttatgaaatta------tgcagtaacaagttggatttttcagttattacccttg |
222133 |
T |
|
| Q |
211 |
tatttgatttatttcgttattttgtttaggatacattaaggtcacatccaccagaaaataaacaaatgaaaagggctaacgtgataggggtatcaacaat |
310 |
Q |
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|||||||||| || | || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
222132 |
tatttgattt-ttccattgttttgtttaggatacattaaagtcacatccagcagaaaataaacaaatgaaaagggctaacgtgataggggtatcaacaat |
222034 |
T |
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| Q |
311 |
gacgataatattcctactatgcagttgccttg |
342 |
Q |
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||| || |||||||||||||| |||||||||| |
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| T |
222033 |
gacaatgatattcctactatgtagttgccttg |
222002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 342
Target Start/End: Complemental strand, 12029947 - 12029835
Alignment:
| Q |
230 |
ttttgtttaggatacattaaggtcacatccaccagaaaataaacaaatgaaaagggctaacgtgataggggtatcaacaatgacgataatattcctacta |
329 |
Q |
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|||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| || ||||| |||||| |
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| T |
12029947 |
ttttgtttaggacacattaaagtcacatccatcagaaaataaacaaatgaaaaaggctaacgtgataggggtgtcaacaatgacaatgatatttctacta |
12029848 |
T |
|
| Q |
330 |
tgcagttgccttg |
342 |
Q |
| |
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|| ||||| |||| |
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| T |
12029847 |
tgtagttgtcttg |
12029835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 12030211 - 12030141
Alignment:
| Q |
63 |
ttcaatgggaaacatagctcttgctagcacttacgctatggttatttacgacataatggtaacatatcaca |
133 |
Q |
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|||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||||||| | |||||| |
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| T |
12030211 |
ttcaatgggaaacatagcacttgcttgcacttatgctactgttatttacgacataatggtaaaaaatcaca |
12030141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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