View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_low_12 (Length: 256)
Name: NF4177_low_12
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38062439 - 38062194
Alignment:
| Q |
1 |
tcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38062439 |
tcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccactcaaaatctcagatttgcat |
38062340 |
T |
|
| Q |
101 |
ccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |
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| T |
38062339 |
ccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaagacatgacctgcagattcg |
38062240 |
T |
|
| Q |
201 |
catccgaagcggcggccacgacttcgagggtcggtcctatgcttct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38062239 |
aatccgaagcggcggccacgacttcgagggtcggtcctatgtttct |
38062194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 38058015 - 38058260
Alignment:
| Q |
1 |
tcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcat |
100 |
Q |
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|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
38058015 |
tcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgcat |
38058114 |
T |
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| Q |
101 |
ccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatttg |
200 |
Q |
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| T |
38058115 |
ccaacacaacacctaaacctcttttcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagattcg |
38058214 |
T |
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| Q |
201 |
catccgaagcggcggccacgacttcgagggtcggtcctatgcttct |
246 |
Q |
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| T |
38058215 |
aatccgaagcggtggccatgattttgagggtcggtcctatgtttct |
38058260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 38072343 - 38072574
Alignment:
| Q |
1 |
tcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcat |
100 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||| |
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| T |
38072343 |
tcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaatactcaaattttcaattcaaaacctcagatttgcaa |
38072442 |
T |
|
| Q |
101 |
ccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatttg |
200 |
Q |
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| T |
38072443 |
ccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagccataatctgttcccaacaccatggcatgcaaattcg |
38072542 |
T |
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| Q |
201 |
catccgaagcggcggccacgacttcgagggtc |
232 |
Q |
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|| || || || ||||||||||||||||||| |
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| T |
38072543 |
aattcgtagtggtggccacgacttcgagggtc |
38072574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38085853 - 38086093
Alignment:
| Q |
1 |
tcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcat |
100 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||||||||| |
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| T |
38085853 |
tcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaattttcaactcaaaatctcagatttgcaa |
38085952 |
T |
|
| Q |
101 |
ccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatttg |
200 |
Q |
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|||| | |||||| ||||| ||||| ||| |||||||| | | |||||||| |||||| ||||| |||| ||||||||| |||| ||||||||||| | |
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| T |
38085953 |
ccaacaaaacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccgtaatttgttcccaataccacagcctgcagattcg |
38086052 |
T |
|
| Q |
201 |
catccgaagcggcggccacgacttcgagggtcggtcctatg |
241 |
Q |
| |
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|| || |||||||| |||||||| ||||||| ||| |||| |
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| T |
38086053 |
aattcgcagcggcggtcacgactttgagggtctgtcttatg |
38086093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 38081428 - 38081625
Alignment:
| Q |
1 |
tcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||| |||||||||| |||||||||| |
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| T |
38081428 |
tcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctaagatttgcat |
38081527 |
T |
|
| Q |
101 |
ccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatt |
198 |
Q |
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|| | | |||||| ||||| |||||||| ||||||||| | | |||||| ||||||||| ||||||| ||||||||||| |||||||| |||||| |
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| T |
38081528 |
cctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagatt |
38081625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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