View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_low_13 (Length: 255)
Name: NF4177_low_13
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 1685156 - 1685330
Alignment:
| Q |
18 |
agttgggatgcaattcattcaaataattcattagtagaatgttatagaaagttgaagtgccnnnnnnntcaatagttaacattgttattttattgaagct |
117 |
Q |
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| T |
1685156 |
agttgggctgcaattcattcaaataattcattagtagtatgttatagaaagttgaagagccaaaaaaatcaatagttaacatcgttattttattgaagct |
1685255 |
T |
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| Q |
118 |
ttgaaaactaatagcgtaagtgtatgtttttgaagtttatctttattaaaatcactatgagtttgatgaaatcac |
192 |
Q |
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| T |
1685256 |
tttaagactaatagtgtaagtgtatgtttttgaagtttatctttaaaaaaatcaggatgagtttgatgaaatcac |
1685330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 1695688 - 1695821
Alignment:
| Q |
18 |
agttgggatgcaattcattcaaataattcattagtagaatgttatagaaagttgaagtgccnnnnnnntcaatagttaacattgttattttattgaagct |
117 |
Q |
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| T |
1695688 |
agttgggctgcaattcattcaaataattcattagtagaatgttaaagaaagttgaagtgccaaaaaaatcaatagttaacattgttattttattgaagct |
1695787 |
T |
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| Q |
118 |
ttgaaaactaatagcgtaagtgtatgtttttgaa |
151 |
Q |
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| T |
1695788 |
ttgaaaactaatagtgtaagtgtatgttattgaa |
1695821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 1685234 - 1685290
Alignment:
| Q |
197 |
acatcgttgtttcattgaagctttcaa-actaatagtgtaagtgtatgtttttgaag |
252 |
Q |
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| T |
1685234 |
acatcgttattttattgaagcttttaagactaatagtgtaagtgtatgtttttgaag |
1685290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 31464753 - 31464782
Alignment:
| Q |
163 |
ttaaaatcactatgagtttgatgaaatcac |
192 |
Q |
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| T |
31464753 |
ttaaaatcactatgagtttgatgaaatcac |
31464782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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