View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_low_19 (Length: 223)
Name: NF4177_low_19
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 13978287 - 13978503
Alignment:
| Q |
3 |
ccttattcacttggacctatgtaatccggcagcttttttcctgtggtcatggatt-agatcaaagttaaagtttagtactcatatataactttgttcaac |
101 |
Q |
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| T |
13978287 |
ccttattcacttggacctatgtaatccggcagcttttttcctgtggtcatggatttagatcaaagttaaagtttagtactcatatataactttgttcaac |
13978386 |
T |
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| Q |
102 |
aacaccatgagtgtatacatgagattttttctcttatataattaattaatcaattaattaattttatgtgttggtgatgatttgatattggactatgttt |
201 |
Q |
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| T |
13978387 |
aacaccatgagtgtatacatgagattttttctcttatataattaatttatcaattaattaattttatgtgttggtgatgatttgatattggactatgttt |
13978486 |
T |
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| Q |
202 |
gtttaattattattttt |
218 |
Q |
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|||||||| || ||||| |
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| T |
13978487 |
gtttaattttttttttt |
13978503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 13968201 - 13968330
Alignment:
| Q |
3 |
ccttattcacttggacctatgtaatccggcagcttttttcctgtggtcatggattag-atcaaagttaaagtttagtactcatatataactttgttcaac |
101 |
Q |
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||||||||||||||||||||||||||||| || |||||| ||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13968201 |
ccttattcacttggacctatgtaatccggtagttttttttctgcggtcatggatttggatcaaagttaaagtttagtactcatatgtaactttgttcaaa |
13968300 |
T |
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| Q |
102 |
aacaccatgagtgtatacatgagatttttt |
131 |
Q |
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||||||||||||||||| || ||||||||| |
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| T |
13968301 |
aacaccatgagtgtatatataagatttttt |
13968330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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