View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_low_20 (Length: 216)
Name: NF4177_low_20
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_low_20 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 14789499 - 14789298
Alignment:
| Q |
18 |
taggagatgaaaattgtctttatatatata--acattcaaaagagaataccaatatctaaacatgtagaaactacaccaagaaaataaattggaatgctc |
115 |
Q |
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| T |
14789499 |
taggagatgaaaattgtctttatatatatataacattcaaaagagaataccaatatctaaacatatagaaactacaccaagaaaataaattggaatgctc |
14789400 |
T |
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| Q |
116 |
aataaggtacaatacatttctacgtgcatgccta-cactttctcatacaattctcctctatagctaaggatcattttcctgaaatgaagaaataatgaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14789399 |
aataaggtacaatacatttctacgtgcatgcctaccactttctcatacaattctcctctatagctaaggatcattttcctgaaatgaagaaataatgaat |
14789300 |
T |
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| Q |
215 |
tc |
216 |
Q |
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|| |
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| T |
14789299 |
tc |
14789298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 17543051 - 17543238
Alignment:
| Q |
18 |
taggagatgaaaattgtctttatatatataacattcaaaagagaataccaatatctaaacatgtagaaactacaccaagaaaataaattggaatgctcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17543051 |
taggagatgaaaattgtctttatatatataacattcaaaagagaataccaatatctaaacatatagaaactacaccaagaaaataaattggaatgctcaa |
17543150 |
T |
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| Q |
118 |
taaggtacaatacatttctacgtgcatgcctacactttctcatacaattctcctctatagctaaggatcattttcctgaaatgaag-aaataatgaattc |
216 |
Q |
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| T |
17543151 |
taaggtacaatacatttctaggtgcatgcc------------tagaattctcctctatagctaagaatcattttcctgaaatgaagaaaataatgaattc |
17543238 |
T |
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