View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4177_low_3 (Length: 423)

Name: NF4177_low_3
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4177_low_3
NF4177_low_3
[»] chr7 (19 HSPs)
chr7 (12-423)||(4783864-4784275)
chr7 (12-423)||(4816293-4816704)
chr7 (100-423)||(4863662-4863988)
chr7 (125-423)||(4636631-4636923)
chr7 (122-330)||(4630692-4630900)
chr7 (207-423)||(4643521-4643737)
chr7 (207-330)||(4672526-4672649)
chr7 (199-423)||(4666777-4667004)
chr7 (102-297)||(4697345-4697543)
chr7 (265-423)||(4662899-4663057)
chr7 (209-423)||(4653372-4653586)
chr7 (121-423)||(4712104-4712406)
chr7 (199-296)||(4846171-4846268)
chr7 (124-176)||(4672443-4672495)
chr7 (125-165)||(4643454-4643494)
chr7 (202-261)||(4647378-4647437)
chr7 (122-165)||(4846299-4846342)
chr7 (125-162)||(4666703-4666740)
chr7 (195-247)||(4661636-4661688)
[»] chr4 (1 HSPs)
chr4 (125-417)||(18925777-18926069)


Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 4784275 - 4783864
Alignment:
Q  12 atgaaacagcaaccacagcaaggannnnnnnngttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggatt 111  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784275 atgaaacagcaaccacagcaaggatttttgttgttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggatt 4784176  T
Q  112 cactccaaagagattatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgt 211  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  4784175 cactccaaagagattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgt 4784076  T
Q  212 agcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4784075 agcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaaccaaaggagcaccac 4783976  T
Q  312 tccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatcaaactcaca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4783975 tccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcaca 4783876  T
Q  412 aaaatgtaacct 423  Q
    ||||||||||||    
T  4783875 aaaatgtaacct 4783864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 4816704 - 4816293
Alignment:
Q  12 atgaaacagcaaccacagcaaggannnnnnnngttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggatt 111  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816704 atgaaacagcaaccacagcaaggatttttgttgttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggatt 4816605  T
Q  112 cactccaaagagattatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgt 211  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||    
T  4816604 cactccaaagagattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgt 4816505  T
Q  212 agcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816504 agcttgatcgaaagattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccac 4816405  T
Q  312 tccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatcaaactcaca 411  Q
    |||||| |||||||||||||  | ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4816404 tccaccatatcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcaca 4816305  T
Q  412 aaaatgtaacct 423  Q
    ||||||||||||    
T  4816304 aaaatgtaacct 4816293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 423
Target Start/End: Original strand, 4863662 - 4863988
Alignment:
Q  100 gggttttggattcactccaaagagatta---tttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagat 196  Q
    |||||||||||||| |||||||| ||||   |||||||| |||||||| ||||||||||||||||||||||| |||||||| ||    |||  ||| |      
T  4863662 gggttttggattcagtccaaagaaattattatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtc 4863761  T
Q  197 tttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa 296  Q
    ||||||||| |||||| ||||| |||||| |||||| |||||||||||||||||||  ||| |||    |||| ||| | ||||||||||||||||||||    
T  4863762 tttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa 4863861  T
Q  297 caaaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatg 396  Q
    | | | ||| ||| ||||||| ||||||||||||    |  ||||||| ||||| | ||||||||||||||||   ||||||||| |  | | | ||||     
T  4863862 ccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatatt 4863961  T
Q  397 ccaatcaaactcacaaaaatgtaacct 423  Q
    |  ||||||||||||||||||||||||    
T  4863962 cggatcaaactcacaaaaatgtaacct 4863988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 4636631 - 4636923
Alignment:
Q  125 ttatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 224  Q
    |||| ||||||||| ||||| ||||||||||||||||| |   | ||||||||||| || |||||||| | || |||||||||||| |||||||| ||||    
T  4636631 ttatatttatcactaattttgaaaatctcgattccattaagaataacatcacgatatactgtaggcatgggttgtggtaatcgttgaagcttgattgaaa 4636730  T
Q  225 gattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcac 324  Q
    ||| |||| |||||||||||||| ||   || |      ||||||  ||  |||||||||||||||||||||| | | ||||||||||||||| ||||||    
T  4636731 gataaactctttcaatttgagagattaatccct------ccatagaaacaacataatccttatgaacaggaaccatacgagcaccactccaccctatcac 4636824  T
Q  325 atcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgtaacct 423  Q
    ||| ||    | |||| ||||| | | ||||||||| ||||||||   ||||||||| |  |  |||||||||||||||||||||||||||||||||||    
T  4636825 atccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgtaacct 4636923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 330
Target Start/End: Original strand, 4630692 - 4630900
Alignment:
Q  122 agattatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcg 221  Q
    |||||| |||||||||||||||| |||||||| |||||||||| |  |||||||||||| |  ||  | |||| || ||||  |||| | |||||||| |    
T  4630692 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattg 4630791  T
Q  222 aaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttat 321  Q
    ||||||||||| |||||||||||||||||||  |||||||   ||||  |||  ||||||||||||||  |||||| | | |||||||||||||||||||    
T  4630792 aaagattaactctttcaatttgagagcttccttcttgagagtacataagcacaacataatccttatgagtaggaaccatacgagcaccactccaccttat 4630891  T
Q  322 cacatcagc 330  Q
    |||||||||    
T  4630892 cacatcagc 4630900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 423
Target Start/End: Original strand, 4643521 - 4643737
Alignment:
Q  207 gttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagc 306  Q
    |||| |||||||| ||||||||| || |||||| ||||||||||||  ||||| |  |||||| ||  ||||||||||||||||||||||| ||| ||||    
T  4643521 gttgaagcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagc 4643620  T
Q  307 accactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatcaaac 406  Q
    ||||||||||| ||||||||| ||    | |||| ||||| | | ||||||||| ||||||||   ||||||||| |  | | | |||| |  |||||||    
T  4643621 accactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatttgttatatccggatcaaac 4643720  T
Q  407 tcacaaaaatgtaacct 423  Q
    |||||||||||||||||    
T  4643721 tcacaaaaatgtaacct 4643737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 4672526 - 4672649
Alignment:
Q  207 gttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagc 306  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||  |||||||   |||||| || ||||||||||||||||||||||| | | ||||    
T  4672526 gttgaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagc 4672625  T
Q  307 accactccaccttatcacatcagc 330  Q
    ||||||||| ||||| ||||||||    
T  4672626 accactccaacttataacatcagc 4672649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 199 - 423
Target Start/End: Original strand, 4666777 - 4667004
Alignment:
Q  199 tggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaaca 298  Q
    ||||| |||||| ||||| || |||||||||||| |||||||||||  ||| || ||||||||| ||||||||| ||||||||||||||||||||||||     
T  4666777 tggtactcgttgaagcttaattgaaagattaactctttcaatttgacggctccctccttgagaatccatagtcaaggcataatccttatgaacaggaacc 4666876  T
Q  299 aaaggagcacc---actccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatat 395  Q
    | | || ||||   ||||||    | ||| |||||     ||||||||| | |||||||||| |||||||||||   |||||||||    |  |||||||    
T  4666877 atacgaacaccactactccaataaagcacgtcagcccttggttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatat 4666976  T
Q  396 gccaatcaaactcacaaaaatgtaacct 423  Q
    |||||||||||||||||||||| |||||    
T  4666977 gccaatcaaactcacaaaaatgcaacct 4667004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 297
Target Start/End: Complemental strand, 4697543 - 4697345
Alignment:
Q  102 gttttggattcactccaaagagattat---ttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattt 198  Q
    ||||||||||   ||||||||||||||   |||||||| ||||||||||||||||||| |||||||| ||||||||||  ||    ||    |||  |      
T  4697543 gttttggatttgatccaaagagattatcatttttatcatttattttcaaaatctcgatgccattcaatgtgacatcaccgtatcttgtgaagatacgtcc 4697444  T
Q  199 tggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaac 297  Q
    ||||  ||||||||||||||| |||||||||| | |||||||||||||||||||  |||||||   ||||| ||| |||||||| ||||||||||||||    
T  4697443 tggtgctcgttgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatgaacaggaac 4697345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 423
Target Start/End: Original strand, 4662899 - 4663057
Alignment:
Q  265 catagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatc 364  Q
    |||||||||  |||||||||||||||||||||| | | || ||  |||||||||||||||||| ||    | |||| | ||| |||||||||| ||||||    
T  4662899 catagtcacaccataatccttatgaacaggaaccatacgaccattactccaccttatcacatcggctaattcttcaactaaattatcatctataaaaatc 4662998  T
Q  365 tgaaatcttctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgtaacct 423  Q
    |||||  |||||||||| |  | | |||||| |  ||||||||||||||||||||||||    
T  4662999 tgaaacattctatcacctttatttatgatattcggatcaaactcacaaaaatgtaacct 4663057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 423
Target Start/End: Original strand, 4653372 - 4653586
Alignment:
Q  209 tgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcac 308  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||  ||| |||   |||||||||  |||||||||||||||||||||  ||| |||||     
T  4653372 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatccttatgaacaggaatcaaacgagcat 4653471  T
Q  309 cactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatcaaactc 408  Q
      |||||    ||||||||||||    ||||||||||   ||||| ||| || ||||| ||   ||||||||| |  |  |||||| |||||||||| ||    
T  4653472 tgctccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcacctttatccttgatacgccaatcaaattc 4653571  T
Q  409 acaaaaatgtaacct 423  Q
    |||||||||||||||    
T  4653572 acaaaaatgtaacct 4653586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 423
Target Start/End: Complemental strand, 4712406 - 4712104
Alignment:
Q  121 gagattatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatc 220  Q
    |||||||||||||||||||||||| |||||||| ||||||||||   |||||||||| ||    ||    |||  || ||||  |||||| ||||| ||     
T  4712406 gagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatt 4712307  T
Q  221 gaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccacctta 320  Q
    ||||| |||||| ||||||||| |||||||||   ||||||   |||  |||| ||||||||||||||||||||||  |    | ||||||||||    |    
T  4712306 gaaaggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatccttatgaacaggaatcatgttaccaccactccagtaaa 4712207  T
Q  321 tcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgtaa 420  Q
    ||||||||||    |||||||||||| ||||||  || || ||||||||   ||||||||| |  |  |||||| ||  |||||||||||||||||||||    
T  4712206 tcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaa 4712107  T
Q  421 cct 423  Q
    |||    
T  4712106 cct 4712104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 4846268 - 4846171
Alignment:
Q  199 tggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa 296  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| |||||||||   ||||||    ||  |||| ||||||||||||||||||||||    
T  4846268 tggtaatcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaa 4846171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 4672443 - 4672495
Alignment:
Q  124 attatttttatcacttattttcaaaatctcgattccattcaacgtgacatcac 176  Q
    ||||||||||||||||| ||| ||||||||||||||||| || ||||||||||    
T  4672443 attatttttatcacttactttgaaaatctcgattccatttaatgtgacatcac 4672495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 4643454 - 4643494
Alignment:
Q  125 ttatttttatcacttattttcaaaatctcgattccattcaa 165  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  4643454 ttatttttgtcacttatttttaaaatctcgattccattcaa 4643494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 4647378 - 4647437
Alignment:
Q  202 taatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgaga 261  Q
    ||||||||| |||||||| |||||||||||| |||||||||||   ||||| ||||||||    
T  4647378 taatcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgaga 4647437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 4846342 - 4846299
Alignment:
Q  122 agattatttttatcacttattttcaaaatctcgattccattcaa 165  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||    
T  4846342 agattgtttttatcacttactttgaaaatctcgattccattcaa 4846299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 4666703 - 4666740
Alignment:
Q  125 ttatttttatcacttattttcaaaatctcgattccatt 162  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  4666703 ttatttttgtcacttatttttaaaatctcgattccatt 4666740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 4661636 - 4661688
Alignment:
Q  195 attttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagag 247  Q
    |||||| |||| |||| |||||||| ||||||| |||| ||||||||||||||    
T  4661636 attttgataatggttgaagcttgattgaaagatcaactctttcaatttgagag 4661688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 125 - 417
Target Start/End: Complemental strand, 18926069 - 18925777
Alignment:
Q  125 ttatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 224  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||| ||| ||    |     |||  || ||||  |||||||||||| || ||||    
T  18926069 ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtattttgagtagatattttctggtgctcgttgtagctttattgaaa 18925970  T
Q  225 gattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcac 324  Q
    |||||||| ||| |||||| ||||||||  || ||||   |||||||||  |||||||||||||||||||||| | | |||||||||||||    |||||    
T  18925969 gattaactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaaccatacgagcaccactccaatgaatcac 18925870  T
Q  325 atcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatcaaactcacaaaaatg 417  Q
    |||||||    ||||||||||| |||||||||| |||||||||||   ||||||||| |  |  || ||||||||||||||||| ||||||||    
T  18925869 atcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatg 18925777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University