View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_low_4 (Length: 401)
Name: NF4177_low_4
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 55674468 - 55674841
Alignment:
| Q |
1 |
aagatatgaaatatatttcagtgataaattaattatcatgaccccaaaattagatcagtataaactgatagtgagaattatttttgtctttcgcaaacta |
100 |
Q |
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| T |
55674468 |
aagatatgaaatatatttcagtgataaattaattatcatgaccccaaaattagatcagtataaactgatagtgagaattatttttgtctttcgcaaacta |
55674567 |
T |
|
| Q |
101 |
aagtgcatgatacaattttggtactatcatgaaaatcaattatgttctacattaagaggccaacaaaataaattaagataaataacaaaccaaacaagtt |
200 |
Q |
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| T |
55674568 |
aagtgcatgatacaattttgctactatcatgaaaattaattatgttctacattaagaggccaacaaaataaattaagataaataacaaaccaaacaagtt |
55674667 |
T |
|
| Q |
201 |
cagttaagaaaggtattttccaaagatcattgagacaataaattgcatatagaaagtgttagaatgaaatccatatatttatattaggattagaatcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
55674668 |
cagttaagaaaggtattttccaaagatcattgagacaataaattgcatatagaaagtgtt------atatccatatatttatattaggattagaatcata |
55674761 |
T |
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| Q |
301 |
aattaggatttaaataagaaaattgtatcttattataaatagagatgagtgtggtcagaaatcac-aaaatcaacatagt |
379 |
Q |
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| T |
55674762 |
aattaggatttaaataagaaaattgtatcttattataaatagagatgagtgtggtcagaaatcacaaaaatcaacatagt |
55674841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 20699399 - 20699355
Alignment:
| Q |
267 |
aaatccatatatttatattaggattagaatcataaattaggattt |
311 |
Q |
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| T |
20699399 |
aaatccatatatatttattaggattagaatcatagattagtattt |
20699355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 19705263 - 19705206
Alignment:
| Q |
267 |
aaatccatatatttat-attaggattagaatcataaattaggatttaaataagaaaat |
323 |
Q |
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|||||||||||||||| || || ||||||||||||||||||||||| ||| ||||||| |
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| T |
19705263 |
aaatccatatatttattatcagcattagaatcataaattaggatttgaattagaaaat |
19705206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 43792711 - 43792661
Alignment:
| Q |
262 |
gaatgaaatccatatatttat-attaggattagaatcataaattaggattt |
311 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||| |||||||||| |
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| T |
43792711 |
gaatcaaatccatatatttattattaggattaaaatcatagattaggattt |
43792661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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