View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_low_5 (Length: 398)
Name: NF4177_low_5
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 56535429 - 56535061
Alignment:
| Q |
11 |
cagagagaaaaaaccttcaaaatgataaattcctgagttatgaattttcaatttattctctctttaacttactcaattgattctacatctactttcttaa |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56535429 |
cagagagaaaaaaccttcaaaatgataaattcc-gagttatgaattttcaatttattctctctttaacttactcaattgattctacatctactttcttaa |
56535331 |
T |
|
| Q |
111 |
tccaagacattattactatgatacaatggtataatagtattatttgcaaataatattaactttaacatccttgccaaattcaatcaaatgcattttacac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56535330 |
tccaagacattattactatgatacaatggtataatagtattattcgcaaataatattaactttaacatccttgccaaattcaatcaaatgcattttacac |
56535231 |
T |
|
| Q |
211 |
aaattttcagcacttacccacagtttatactttgagcaattcttgtcatttcagtccaacagaaaacatatagaaacatagaaaatcaagtaataacaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56535230 |
aaattttcagcacttacccacagtttatactttgagcaattcttgtcatttcagtccaacagaaaacatatagaaacatagaaaatcaagtaataacaat |
56535131 |
T |
|
| Q |
311 |
aaaaaatcaatgcattcatttgggggaatttctaatcatgcaaaacaacctaatttatttatgttatctc |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56535130 |
aaaaaatcaatgcattcatttgggggaatttctaatcatgcaaaacaacctaatttatttatgttatctc |
56535061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 52 - 380
Target Start/End: Original strand, 27265353 - 27265684
Alignment:
| Q |
52 |
gaattttcaatttattctctctttaacttactcaattgattctacatctactttcttaatccaagacattattactatgatacaatggtataatagtatt |
151 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | | || |
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| T |
27265353 |
gaattttcaatctattctttctttaacttactcaattgattctacatctactttcttagtctaagacattattactatgatacaatggtataacaatgtt |
27265452 |
T |
|
| Q |
152 |
atttgcaaataatattaactttaacatccttgccaaattcaatcaaatgcattt-tacacaaattttcagcacttacccacagtttatactttgagcaat |
250 |
Q |
| |
|
||| |||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||||| |
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| T |
27265453 |
attcgcaagtaatgtgaactttaacatccttgccaaattcaatcaaatgcatttctacacaaattttcagcactttcccgcatattatactttgagcaat |
27265552 |
T |
|
| Q |
251 |
tcttgtcatttcagtccaacagaaaacatatagaaacatagaaaatcaagtaataacaat--aaaaaatcaatgcattcatttgggggaatttctaatca |
348 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27265553 |
tcttgtcatttcagtccaacataaaacatatagaaacatagaaaatcacgtaataacaataaaaaaaatcaatgcattcatttgggggaatttctaatca |
27265652 |
T |
|
| Q |
349 |
tgcaaaacaacctaatttatttatgttatctc |
380 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |
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|
| T |
27265653 |
tgcaaaataacctaatttttttatgttatctc |
27265684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 52 - 380
Target Start/End: Complemental strand, 22694606 - 22694273
Alignment:
| Q |
52 |
gaattttcaatttattctctctttaacttactcaattgattctacatctactttcttaatccaagacattattactatgatacaatggtataatagtatt |
151 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||| ||| || |
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|
| T |
22694606 |
gaattttcaatctattctttctttaacttactcaattgattctacatctactttcttaatctat-agagtattactatgatacaatggtataacagtgtt |
22694508 |
T |
|
| Q |
152 |
atttgcaaataatattaactttaacatccttgccaaattcaatcaaatgcattt-tacacaaattttcagcacttacccacagtttatactttgagcaat |
250 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| | |||| |||||||||||||||| |
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|
| T |
22694507 |
attcgcaaataatattaactttaacatccttgccaaatttaatcaaatgcatttctacaaatttttttagcactttcacacatattatactttgagcaat |
22694408 |
T |
|
| Q |
251 |
tcttgtcatttcagtccaacagaaaacatatagaaacatagaaaatcaagtaataacaat-----aaaaaatcaatgcattcatttgggggaatttctaa |
345 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
22694407 |
tcttatcatttcagtccgacagaaaacatatagaaacatagaaaatcaagtaataacaataaaataaaaaatcaatgcattcatttgggggaatttttaa |
22694308 |
T |
|
| Q |
346 |
tcatgcaaaacaacctaatttatttatgttatctc |
380 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| |
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|
| T |
22694307 |
tcatgcaaaataacctaatttttttatgttatctc |
22694273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 23611485 - 23611564
Alignment:
| Q |
71 |
tctttaacttactcaattgattctacatctac-tttcttaatccaagacattattactatgatacaatggtataatagta |
149 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||||||| |||| | ||| |||||| |||| |
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|
| T |
23611485 |
tctttcacttactcaattgatcatacttctacatttcttaatctaagacattattaccatgacataatagtataaaagta |
23611564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 23842881 - 23842960
Alignment:
| Q |
71 |
tctttaacttactcaattgattctacatctac-tttcttaatccaagacattattactatgatacaatggtataatagta |
149 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||||||| |||| | ||| |||||| |||| |
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|
| T |
23842881 |
tctttcacttactcaattgatcatacttctacatttcttaatctaagacattattaccatgacataatagtataaaagta |
23842960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 33641552 - 33641614
Alignment:
| Q |
140 |
tataatagtattatttgcaaataatattaactttaacatccttgccaaattcaatcaaatgca |
202 |
Q |
| |
|
||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
33641552 |
tataaaagtaatattcacaaataagattaactttaacatccttgccaaattcaatcaaatgca |
33641614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 33641474 - 33641520
Alignment:
| Q |
56 |
tttcaatttattctctctttaacttactcaattgattctacatctac |
102 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
33641474 |
tttcaatctattctttctttcacttactcaattgattctacatctac |
33641520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 40068764 - 40068848
Alignment:
| Q |
66 |
ttctctctttaacttactcaattgattctacatctac-tttcttaatccaagacattattactatgatacaatggtataatagta |
149 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||| ||||| |||||||||| | ||||||||||| |||| | ||| |||||| |||| |
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|
| T |
40068764 |
ttctttctttcacttactcaattgatcatacttctacatttcttaatctatgacattattaccatgacataatagtataaaagta |
40068848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 24640480 - 24640553
Alignment:
| Q |
77 |
acttactcaattgattctacatctac-tttcttaatccaagacattattactatgatacaatggtataatagta |
149 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||| ||||||||||||| |||| | ||| |||||| |||| |
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|
| T |
24640480 |
acttactcaattgatcatacttctacatttcttaatctaagacattattaccatgacataatagtataaaagta |
24640553 |
T |
|
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