View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4177_low_9 (Length: 334)
Name: NF4177_low_9
Description: NF4177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4177_low_9 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 11996694 - 11996999
Alignment:
| Q |
18 |
ctaattggggttttgttgagtcagagaccaatgtgacggtgagttacgttttcagccatcaatcaccaccaacttgcctctcccatgagtcttccacaat |
117 |
Q |
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| T |
11996694 |
ctaattggggttttattgagtcagagaccaatgtgacggtgagttacgctttcagccatcaatcaccaccaacttgcctctcccatgagtcttccacaat |
11996793 |
T |
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| Q |
118 |
caattcatcaactccccaatcttcatagctgcacaattttgtaaaaacagaaaacgcatgacatgaaggaaaattcagcttaagtcttaacacatctttc |
217 |
Q |
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| T |
11996794 |
caattcatcaactccccaatcttcatagctgcacaattttgtaaaaacagaaaacgcatgacatgaatgaaaattcagcttaagtcttaacacatctttc |
11996893 |
T |
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| Q |
218 |
acctttccaaaactaaaaaagaaagaatcaagctcagtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctc |
317 |
Q |
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| T |
11996894 |
acctttccaaaactaaaaaagaaagaatcaagctcagtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctc |
11996993 |
T |
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| Q |
318 |
tttcat |
323 |
Q |
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|||||| |
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| T |
11996994 |
tttcat |
11996999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 67 - 323
Target Start/End: Complemental strand, 106467 - 106191
Alignment:
| Q |
67 |
tttcagccatcaatcaccaccaacttgcctctcccatgagtcttccacaatcaattcatcaactccccaatcttcatagctgcacaattttgtaaaaaca |
166 |
Q |
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| T |
106467 |
tttcagccatcaatcaccaccaacttgcctcttccatgagtcttccacaatcaattcatcaactccccagtcttcatagctgcacaattttgcaaaaaca |
106368 |
T |
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| Q |
167 |
gaaaacgcatgacatgaaggaaaattcagcttaagtcttaaca---catctttcacctttccaaaactaaaaaagaaa-----------------gaatc |
246 |
Q |
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| T |
106367 |
gaaaacgcatgacatgaaggaaaattcaacttaagtcttaacataccctctcacccctttccaaaactaaaaaaaaaaaaaaaaaaaaaaaaaaggaatc |
106268 |
T |
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| Q |
247 |
aagctcagtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcat |
323 |
Q |
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| T |
106267 |
aagcacagtaattaccttccatcaggcaaataacgacggatggtaaagggtatctttttctctcgaagctctttcat |
106191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 36635034 - 36634952
Alignment:
| Q |
75 |
atcaatcaccaccaacttgcctctcccatgagtcttccacaatcaattcatcaactccccaatcttcatagctgcacaatttt |
157 |
Q |
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| T |
36635034 |
atcaatcgccacccacttgtctcttccaggagtcttccacaatcagctcatcaactccccaatcttcatagctggacaatttt |
36634952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 36634849 - 36634809
Alignment:
| Q |
253 |
agtaattaccttccatcaggcaagtaacgacggatggtaaa |
293 |
Q |
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| T |
36634849 |
agtatttaccttccatcaggcaagtagcgacggatggtaaa |
36634809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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