View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_high_10 (Length: 402)
Name: NF4178_high_10
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 25431399 - 25431021
Alignment:
| Q |
16 |
caaaattcattagttcaccagcactacctatctcatcatcagaagtaagttgtcaatctactagtctta--ggaatcagtttgtttctgtgtgaccttac |
113 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25431399 |
caaaattcattagttcaccatcactacctatctcatcatcagaaataagttgtcaatctactagtcttataggaatcagtttgtttctgtgtgaccttac |
25431300 |
T |
|
| Q |
114 |
attattgttttgaccttcatctgagttcacttcttcattcactacttttagtgattgtgagctccttatttgtgtggctttcttcaattacaatgttctt |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25431299 |
attgatgttttgaccttcatctgagttcacttcttcattcactacttttagtgatagtgagctccttatttgtgtggctttcttcaattacaatgttctt |
25431200 |
T |
|
| Q |
214 |
agtagagacattgtattcatttgtttttcagtcccagtgttcattgttaacaggttgagtagtctgtatgctccaagttttgtgataacctacaatgatc |
313 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25431199 |
agtagagacattgtattcattttttttccagtcccagtgttcattgttaacgggttgagtagtctgtatgctccaagttttgtgataacctacaatgatt |
25431100 |
T |
|
| Q |
314 |
ataggctcgctgctgtcttctagcnnnnnnnnatagcataagggatacacttacattataaagaaccaactactctgtg |
392 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25431099 |
ataggctcgctgttgtcttctaatttttttttatagcataagggatacacttacattataaagaaccaactactctgtg |
25431021 |
T |
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