View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_high_19 (Length: 256)
Name: NF4178_high_19
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 27541981 - 27541820
Alignment:
| Q |
25 |
caataatttccaaaacttaaaccaatagcagaagatatttcctttctaggtggtagnnnnnnnnnnnnnnnncaggattctaatccgcatcttcattgat |
124 |
Q |
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| T |
27541981 |
caataatttccaaaacttaaaccaatagcagaagatatttcctttctaggtggaagaaaaaaaaaacaaa--caggattctaatccgcatcttcattgat |
27541884 |
T |
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| Q |
125 |
ctatttcctaccgtttcctaatgtcttcaaaaaatcaaagaaacaaattaatggaactctctta |
188 |
Q |
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| T |
27541883 |
ctatttcctaccgtttcctaatgtctttaaaaaatcaaagaaacaaattaatggaactctctta |
27541820 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 27447040 - 27447121
Alignment:
| Q |
115 |
cttcattgatctatttcctaccgtttcctaatgtcttcaa-------aaaatcaaagaaacaaattaatggaactctcttat |
189 |
Q |
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| T |
27447040 |
cttcattgatctatttcctaccatttcctaatgtctttaacaaatagaaaatcaaagaaacaaagtaaaggaactctcttat |
27447121 |
T |
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