View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4178_high_20 (Length: 234)
Name: NF4178_high_20
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 26126282 - 26126481
Alignment:
| Q |
13 |
agcataggtatgggtgctcgttaagtttttgaagaacaactaagacacagaaacaaggttatcgaggtgtgccatcggagaaaggtttgagagcatcttg |
112 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26126282 |
agcataagtataggtgctcgttaagtatttgaagaacaactaagacacagaaacaaggttatcaaggtgtgccatccgagaaaggtttgagagcatcttg |
26126381 |
T |
|
| Q |
113 |
gttcccattaacatagtattcaacaaccgctttcattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgagttta |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26126382 |
gttcccattaacatagtattcaacaactgctttcattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgagttta |
26126481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 26084077 - 26084258
Alignment:
| Q |
27 |
tgctcgttaagtttttgaagaacaactaagacacagaaacaaggttatcgaggtgtgccatcggagaaaggtttgagagcatcttggttcccattaacat |
126 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26084077 |
tgctggttaagttttagaacaacaactaagacatagaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacat |
26084176 |
T |
|
| Q |
127 |
agtattcaacaaccgctttcattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgag |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
26084177 |
agtattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataataaccggtttcaatttactgag |
26084258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 26096360 - 26096533
Alignment:
| Q |
35 |
aagtttttgaagaacaactaagacacagaaacaaggttatcgaggtgtgccatcggagaaaggtttgagagcatcttggttcccattaacatagtattca |
134 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26096360 |
aagtttttgaacaacaacttagacacaaaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattca |
26096459 |
T |
|
| Q |
135 |
acaaccgctttcattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgag |
208 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26096460 |
acaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataattaccggtttcaatttactgag |
26096533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 26119628 - 26119820
Alignment:
| Q |
13 |
agcataggtatgggtgctcgttaagtttttgaagaacaactaagacacagaaacaaggttatcgaggtgtgccatcggagaaaggtttgagagcatcttg |
112 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| |||| || ||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26119628 |
agcataagtataggtgctcgttaagtttttgaacaacagcttagacata---acaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttg |
26119724 |
T |
|
| Q |
113 |
gttcccattaacatagtattcaacaaccgctttcattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgag |
208 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26119725 |
gttcccattaacataatattcaacaactgctttcattcgcgtaagcttatcacggtggtaattcaagtgaataataaccggtttcaatttactgag |
26119820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 26075488 - 26075664
Alignment:
| Q |
32 |
gttaagtttttgaagaacaactaagacacagaaacaaggttatcgaggtgtgccatcggagaaaggtttgagagcatcttggttcccattaacatagtat |
131 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
26075488 |
gttatgtttttgaacaacaactaagacatagaaacaaggttatcgatgtgtgccatcgggaaaaggtttcagagcatcttagttcccattaacataatat |
26075587 |
T |
|
| Q |
132 |
tcaacaaccgctttcattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgag |
208 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26075588 |
tcaacaactgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataaccggtttcaatttactgag |
26075664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 52 - 212
Target Start/End: Original strand, 26064377 - 26064537
Alignment:
| Q |
52 |
ctaagacacagaaacaaggttatcgaggtgtgccatcggagaaaggtttgagagcatcttggttcccattaacatagtattcaacaaccgctttcattcg |
151 |
Q |
| |
|
|||||||||||||||||||||| | || |||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
26064377 |
ctaagacacagaaacaaggttaccactttgagccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcg |
26064476 |
T |
|
| Q |
152 |
cggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgagttta |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26064477 |
cggaagcttatcagggtggtaattcacgtgaataattaccggtttcaatttactgagttta |
26064537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 26035723 - 26035885
Alignment:
| Q |
46 |
gaacaactaagacacagaaacaaggttatcgaggtgtgccatcggagaaaggtttgagagcatcttggttcccattaacatagtattcaacaaccgcttt |
145 |
Q |
| |
|
||||||||||||||| |||| ||||||| | | || |||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
26035723 |
gaacaactaagacacggaaataaggttaccaatctgagccatcagagaaaggtttgagagcatcttgtttcccattgacataatattcgacaactgcttt |
26035822 |
T |
|
| Q |
146 |
cattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
26035823 |
cattcgcggaagcttatcagggtggtaattcacgtgaacaattactggtttcaatttactgag |
26035885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University