View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_high_22 (Length: 225)
Name: NF4178_high_22
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 11240477 - 11240373
Alignment:
| Q |
7 |
attctccattcattataaatttacaaaatacacttgcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
106 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240477 |
attctccattcattataaatttacaaaatacactagcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
11240378 |
T |
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| Q |
107 |
cacat |
111 |
Q |
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||||| |
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| T |
11240377 |
cacat |
11240373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 11225687 - 11225590
Alignment:
| Q |
111 |
ttaaaaaatgggtgtgtcaaattttaatttttgtgctcatgtgccatgtccttcgttaatattttcgatccatgcttgttagcgtttgatctgaaata |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11225687 |
ttaaaaaatgggtgtgtcaaattttaatttttgtgctcatgtgtcatgtccttcgttaatattttcgatccatgcttgttagcgtttgatctgaaata |
11225590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 11240734 - 11240630
Alignment:
| Q |
7 |
attctccattcattataaatttacaaaatacacttgcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
106 |
Q |
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||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240734 |
attctccattcatcataaatcaacaaaatacactagcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
11240635 |
T |
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| Q |
107 |
cacat |
111 |
Q |
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||||| |
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| T |
11240634 |
cacat |
11240630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 11864409 - 11864305
Alignment:
| Q |
7 |
attctccattcattataaatttacaaaatacacttgcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatc |
106 |
Q |
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||||||||||||| |||||| |||| |||||| |||| ||||| |||||||||||||||| ||| || |||| ||| |||| ||||||||||||||| |
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| T |
11864409 |
attctccattcatcataaatcatcaaattacactagcatcatcatttaaaagtataaccatagacttatctccatctatattcacataaagcacataatc |
11864310 |
T |
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| Q |
107 |
cacat |
111 |
Q |
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||||| |
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| T |
11864309 |
cacat |
11864305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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