View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_high_6 (Length: 507)
Name: NF4178_high_6
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 6 - 489
Target Start/End: Original strand, 41264129 - 41264605
Alignment:
| Q |
6 |
agcagcacagaccatcagttgaaacatctggataatattattcacaagaaatgatcagcatccctcaagctgcacataacataggatctaatgtttgaat |
105 |
Q |
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| T |
41264129 |
agcaccacacaccatcagttgaaacatctggataatattattcacaagaaatgatcagcatccctcaagctgcacataacataggatctaatgtttgaat |
41264228 |
T |
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| Q |
106 |
ataatcttaactatcttgcaagtcacattcaagatttgtgattagttgacacttggcagtgtaaaattttgcaaccatagttcatcaacattaaaatata |
205 |
Q |
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| T |
41264229 |
ataatattaactatcttgcaagtcacatacaagatttgtgattagttgacacttggcagtgtaaaattttgcacccatagttcatcaacattaaaatata |
41264328 |
T |
|
| Q |
206 |
gttgactatgtcaaattttaatacatataattaataaggccacaagctatgaaatacggatacaaacatgaacatcagacatgacactgacacataataa |
305 |
Q |
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| T |
41264329 |
gttgactatgtcaaattttaatacata----taataaggccacaagctatgaaataccgatacaaacatgaacatcagacatgacactgacac---ataa |
41264421 |
T |
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| Q |
306 |
taaactggatatagtttatacgaaaacagcttaacagagaatatagtacctcctttgagaatgcagagaccaaagtgaagaataaatctgcagatatcgc |
405 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41264422 |
taaattggttatagtttatacgaaaacagcttaacagagaatatagtacctcctttgagaatgcagagaccaaagtgaagaataaatctgcagatatcgc |
41264521 |
T |
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| Q |
406 |
aagcgagaccagtcttgtcgggacaattgacagtgatgatgaaagggtcaccgggtttgtttcctagctgaatatgtacagagt |
489 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41264522 |
aagcgagaccggtcttgtcgggacaattgacagtgatgatgaaagggtcaccgggtttgtttcctagctgaatttgtacagagt |
41264605 |
T |
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