View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_high_9 (Length: 402)
Name: NF4178_high_9
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 7210031 - 7210404
Alignment:
| Q |
19 |
aaatcagcttttatatattactgcagttaatttggataagttactgtgttggacttggatgctgctgcaattgattcagtgatcatgagactctaccttg |
118 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7210031 |
aaatcagcttttatctattactgcagttaatttggattagttactgtgttggacttggatgctgctgcaattgattcagtgatcatgagactctaccttg |
7210130 |
T |
|
| Q |
119 |
cattgtttttctttttgacctctcttcaagttactctaagtaaagatattgaacatggtttgctactagtaaatggagctcaagcaaaagctgaaacagg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7210131 |
cattgtttttctttttgacctctcttcaagttactcttagtaaagatattgaacatggtttgctactagtaaatggagctcaagcaaaagctgaaacagg |
7210230 |
T |
|
| Q |
219 |
tgataacttcatttgtgccactattgattggtggcctcatgataaatgcaacgacggctattgttcttggggacactcatctattgtaaatttggtgagt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7210231 |
tgataacttcatttgtgccactattgattggtggcctcatgataaatgcaacgacggctattgttcttggggacactcatctattgtaaatttggtgagt |
7210330 |
T |
|
| Q |
319 |
attctgttctatgaagcacggattctaacacggacacctaacacgacactgacaatacgtcaacttgatgatgt |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
7210331 |
attctgttctatgaagcacggattctaacacggacacctaacacgacactgacaatacgtcaacttgctgatgt |
7210404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 7203661 - 7203963
Alignment:
| Q |
19 |
aaatcagcttttatatattactgcagttaatttggataagttactgtgttggacttggatgctgctgcaattgattcagtgatcatgagactctaccttg |
118 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
7203661 |
aaatcaacttttatctattactgcagttaatttggattagttactgtgttggacttggatgctgctgcaattgattcagtcatcatgagactctcccttg |
7203760 |
T |
|
| Q |
119 |
cattgtttttctttttgacctctcttcaagttactctaagtaaagatattgaacatggtttgctactagtaaatggagctcaagcaaaagctgaaacagg |
218 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
7203761 |
cattgttcatctttttggcctctcttcaagttactctaagtaaagatgttgaacatggtttgatactagtaaatggagctcaagcaaaagctgaaatagg |
7203860 |
T |
|
| Q |
219 |
tgataacttcatttgtgccactattgattggtggcctcatgataaatgcaacgacggctattgttcttggggacactcatctattgtaaatttggtgagt |
318 |
Q |
| |
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||||||||||||||| || || |||||||||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||| ||||||||| || |
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| T |
7203861 |
tgataacttcatttgcgcaacgattgattggtggcctcctgaattatgcaacttcggcgtttgttcttggggacattcatctattgtcaatttggtgtgt |
7203960 |
T |
|
| Q |
319 |
att |
321 |
Q |
| |
|
||| |
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|
| T |
7203961 |
att |
7203963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 7196364 - 7196670
Alignment:
| Q |
19 |
aaatcagcttttatatattactgcagttaatttggataagttact-------gtgttggacttggatgctgctgcaattgattcagtgatcatgagactc |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
7196364 |
aaatcagcttttatctattactgcagttaatttggattagttactgactactgtgttggacttggatgctgctgcaattcattcagtcatcatgagactc |
7196463 |
T |
|
| Q |
112 |
taccttgcattgtttttctttttgacctctcttcaagttactctaagtaaagatattgaacatggtttgctactagtaaatggagctcaagcaaaagctg |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7196464 |
taccttgcattgtttttctttttggcctctcttcaagttactctaagtaaagatattgaacatggtttgctactagtaaatggagctaaagcaaaagctg |
7196563 |
T |
|
| Q |
212 |
aaacaggtgataacttcatttgtgccactattgattggtggcctcatgataaatgcaacgacggctattgttcttggggacactcatctattgtaaattt |
311 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||| || |||||||| |||| ||||||||||||||| || |||||||||||||| |
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| T |
7196564 |
aaacaggtgataacttcatttgcgcaacgattgattggtggcctcctg---aatgcaacttcggcgtttgttcttggggacattcgtctattgtaaattt |
7196660 |
T |
|
| Q |
312 |
ggtgagtatt |
321 |
Q |
| |
|
|||| ||||| |
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|
| T |
7196661 |
ggtgtgtatt |
7196670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 257
Target Start/End: Original strand, 45387644 - 45387740
Alignment:
| Q |
161 |
aagatattgaacatggtttgctactagtaaatggagctcaagcaaaagctgaaacaggtgataacttcatttgtgccactattgattggtggcctca |
257 |
Q |
| |
|
|||||||||||||||||| | |||||| |||| ||||| || ||||||| | ||||||||||||||| || |||||||||||||||||||| |
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| T |
45387644 |
aagatattgaacatggttccatcgaagtaaacggagttcaaggaattgctgaaaatgatgataacttcatttgcgctactattgattggtggcctca |
45387740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 8160373 - 8160419
Alignment:
| Q |
326 |
tctatgaagcacggattctaacacggacacctaacacgacactgaca |
372 |
Q |
| |
|
||||||| |||||||| || ||||||||||| ||||||||||||||| |
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| T |
8160373 |
tctatgatgcacggatactgacacggacaccgaacacgacactgaca |
8160419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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