View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4178_low_1 (Length: 743)

Name: NF4178_low_1
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4178_low_1
NF4178_low_1
[»] chr3 (8 HSPs)
chr3 (18-280)||(3364332-3364594)
chr3 (282-534)||(3364035-3364297)
chr3 (285-492)||(18270308-18270515)
chr3 (666-728)||(3363831-3363893)
chr3 (282-379)||(893663-893761)
chr3 (626-687)||(3363891-3363952)
chr3 (282-492)||(43275264-43275475)
chr3 (667-728)||(9491861-9491922)
[»] chr1 (10 HSPs)
chr1 (284-484)||(11408391-11408592)
chr1 (288-484)||(6504351-6504548)
chr1 (282-436)||(615054-615209)
chr1 (644-727)||(17896112-17896195)
chr1 (644-728)||(727034-727118)
chr1 (282-481)||(34653204-34653406)
chr1 (282-407)||(34117413-34117539)
chr1 (282-447)||(27340221-27340388)
chr1 (284-374)||(14351759-14351850)
chr1 (322-407)||(26237186-26237271)
[»] chr8 (4 HSPs)
chr8 (282-492)||(10408139-10408350)
chr8 (281-491)||(5993936-5994148)
chr8 (282-492)||(20860612-20860821)
chr8 (284-380)||(6443326-6443423)
[»] chr4 (11 HSPs)
chr4 (315-492)||(23054869-23055046)
chr4 (284-380)||(24958263-24958360)
chr4 (644-727)||(40757347-40757430)
chr4 (278-407)||(47519118-47519246)
chr4 (282-492)||(14566577-14566796)
chr4 (284-492)||(53201582-53201788)
chr4 (644-712)||(7103020-7103088)
chr4 (282-407)||(31360732-31360857)
chr4 (644-728)||(11423716-11423800)
chr4 (282-371)||(34227681-34227771)
chr4 (304-447)||(6409335-6409481)
[»] scaffold0341 (1 HSPs)
scaffold0341 (288-484)||(6034-6231)
[»] chr2 (9 HSPs)
chr2 (282-490)||(17374629-17374837)
chr2 (282-408)||(34659580-34659710)
chr2 (282-490)||(11163636-11163842)
chr2 (282-393)||(4868943-4869055)
chr2 (282-413)||(1552251-1552381)
chr2 (282-375)||(1894739-1894833)
chr2 (288-492)||(17282524-17282727)
chr2 (644-689)||(27727684-27727729)
chr2 (283-345)||(30799263-30799326)
[»] chr5 (12 HSPs)
chr5 (282-492)||(27170708-27170921)
chr5 (282-492)||(1377541-1377753)
chr5 (288-492)||(6030920-6031126)
chr5 (282-379)||(7269968-7270066)
chr5 (282-394)||(26656041-26656154)
chr5 (282-394)||(26927628-26927741)
chr5 (283-372)||(38959301-38959391)
chr5 (286-407)||(21600515-21600638)
chr5 (282-399)||(1157868-1157986)
chr5 (282-380)||(18696319-18696418)
chr5 (669-722)||(15908971-15909024)
chr5 (431-492)||(7767625-7767686)
[»] chr7 (9 HSPs)
chr7 (644-728)||(14070686-14070770)
chr7 (644-728)||(14380714-14380798)
chr7 (282-492)||(29549910-29550121)
chr7 (644-728)||(11791492-11791576)
chr7 (281-492)||(1777891-1778104)
chr7 (289-374)||(26199187-26199273)
chr7 (282-407)||(11699013-11699137)
chr7 (281-492)||(3301737-3301953)
chr7 (670-728)||(9112789-9112847)
[»] scaffold0009 (1 HSPs)
scaffold0009 (284-484)||(53778-53979)
[»] scaffold0005 (1 HSPs)
scaffold0005 (282-492)||(250579-250798)
[»] chr6 (6 HSPs)
chr6 (304-487)||(34213987-34214171)
chr6 (288-380)||(21880758-21880850)
chr6 (282-410)||(1869250-1869377)
chr6 (309-398)||(20739951-20740039)
chr6 (425-492)||(3524153-3524220)
chr6 (284-367)||(24046002-24046085)
[»] scaffold0524 (1 HSPs)
scaffold0524 (657-728)||(10791-10862)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 3364594 - 3364332
Alignment:
Q  18 tttctaacctcttataaagaaattccaggtagaaggctgacgacagacggagcagcgacggagaaaaggattggacgcagtgacgagaaagactttagga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  3364594 tttctaacctcttataaagaaattccaggtagaaggctgacgaaagacggagcagggacggagaaaaggataggacgcagtgacgagaaagactttagga 3364495  T
Q  118 atgagcaaagaaaaatacaagacactttgtgagctatttgaaaatataaaacacctttcacatcgggtggaaacctacccgacatgaagttataaattan 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  3364494 atgagcaaagaaaaatacaagacactttgtgagctatttgaaaatataaaacacctttcacatcgggtggaaacctacccgacatgaacttataaattat 3364395  T
Q  218 nnnnnnnnnnnngaaccagagtttgtggctctttttggtgatgtgattttgatttataactta 280  Q
                |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3364394 ttttgtttttttgaaccagagtttgtggctctttttggtgatgtgattttgatttataactta 3364332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 282 - 534
Target Start/End: Complemental strand, 3364297 - 3364035
Alignment:
Q  282 aaaagctaaaatggaatttattaaa-ttgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||    
T  3364297 aaaagataaaatggaatttattaaaattgcaatgaatcttaaccagcacaaggagtgttaggttatgagtcttaaagtaacagcatacaaaggatagatg 3364198  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaa 480  Q
    || |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||  |||  ||||||||||||||| |||||||||||||||    
T  3364197 aggagcccccaatgaaaaactcatacatccgtgcttcaaagaataaatccaaaaaacttataagaaacgcctcattacaaagagctatctccaaaatcaa 3364098  T
Q  481 taaa---------tagaaacaaaactatcaccacgatcaacatacttacataagctaatacga 534  Q
    ||||         || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  3364097 taaataaaaacactaaaaacaaaactatcaccaccatcaacatacttacataagctaatacga 3364035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 285 - 492
Target Start/End: Complemental strand, 18270515 - 18270308
Alignment:
Q  285 agctaaaatggaatttattaaa-ttgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgaga 383  Q
    |||||||||||||||||||||| ||| |||||||||||||  | ||||| | || |||||| ||||||||||| ||  ||||||||||||||||||| |     
T  18270515 agctaaaatggaatttattaaaattgaaatgaatcttaaccggtacaagaaatgctaggctgtgagttttaaa-tagtaacatacaaaggatagatgggg 18270417  T
Q  384 agcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataa 483  Q
     ||| ||||| ||||||||||||| || ||  |||||||| ||||||||||||| ||||| |||  |||| |  ||||||| ||||||  |||||||| |    
T  18270416 tgcctccaatgaaaaacccatacacccgtgaatcaaagaaaaaatccaaaaaacctataggaaacgcctcctagcaaagagctatctctgaaatcaatta 18270317  T
Q  484 atagaaaca 492  Q
    |||||||||    
T  18270316 atagaaaca 18270308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 666 - 728
Target Start/End: Complemental strand, 3363893 - 3363831
Alignment:
Q  666 ctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3363893 ctttgatgctcaacaaattcttcagttgccaatttctttctctcaatcacaagatgagtttgt 3363831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 893761 - 893663
Alignment:
Q  282 aaaagctaaaatggaatttatt-aaattgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagat 379  Q
    |||||||||||||||||||||| |||| ||||| ||||||||| |||||||||| || ||||||| |||| ||||||||  |||||||||| |||||||    
T  893761 aaaagctaaaatggaatttattaaaatcgcaataaatcttaaccagcacaaggagtgctaggctaggagtcttaaagtagaaacatacaaatgatagat 893663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 626 - 687
Target Start/End: Complemental strand, 3363952 - 3363891
Alignment:
Q  626 gtaatcttatttgaaagataattaatgaaaattttctcccctttgaggctcaacaaattctt 687  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||    
T  3363952 gtaatcttatttgaaagataattaatgaaaattttttgccctttgatgctcaacaaattctt 3363891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 282 - 492
Target Start/End: Original strand, 43275264 - 43275475
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||||||| |||| ||||||||||| | ||||||||||||||  |||| ||||| || ||| ||| ||||  ||||||| |||||||||||||||||| |    
T  43275264 aaaagctagaatgaaatttattaaaatcgcaatgaatcttaatcagcataaggagtgctagcctaggagtcataaagtagcaacatacaaaggatagaag 43275363  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaa 480  Q
     | |||||| |||  |||| |||||||    ||  | ||| || ||||||||||||| |||||||||    || | |||||| | ||||||| |||||||    
T  43275364 gggagccccaaatggaaaatccatacacttgtgaataaaaaaaaaaatccaaaaaacctatagaaaacgtgtcctaacaaagggctatctccgaaatcaa 43275463  T
Q  481 taaatagaaaca 492  Q
    ||||||||||||    
T  43275464 taaatagaaaca 43275475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 728
Target Start/End: Complemental strand, 9491922 - 9491861
Alignment:
Q  667 tttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||||| |||||||||||||||| ||  |||||||||||||||| |  |||||||| |||||    
T  9491922 tttgagcctcaacaaattcttcaattgtcaatttctttctctcatttgcaagatgaatttgt 9491861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 284 - 484
Target Start/End: Complemental strand, 11408592 - 11408391
Alignment:
Q  284 aagctaaaatggaatttattaaa-ttgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgag 382  Q
    ||||||||||||||||||||||| |||||||||||| |||| |||||||||| || |||| ||||||| ||||||||  ||||||||||||||||| | |    
T  11408592 aagctaaaatggaatttattaaaattgcaatgaatcataaccagcacaaggagtgctaggttatgagtcttaaagtagtaacatacaaaggatagacggg 11408493  T
Q  383 aagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaata 482  Q
     |||||||||| |||||| |||||| || ||| |||||||  |||||||||||| |||||||||| ||| | | |||||||| ||||||| |||||||||    
T  11408492 gagcccccaatgaaaaactcatacacccgtgcatcaaagacaaaatccaaaaaatttatagaaaacaccacctaacaaagagctatctccgaaatcaata 11408393  T
Q  483 aa 484  Q
    ||    
T  11408392 aa 11408391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 288 - 484
Target Start/End: Complemental strand, 6504548 - 6504351
Alignment:
Q  288 taaaatggaatttattaaattg-caatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgagaagc 386  Q
    |||||| |||||||||||| |  ||||||||  |||| |||||||||| ||||||||||||||| |||| ||| ||||||| |||||||||||| | |||    
T  6504548 taaaatagaatttattaaaatcacaatgaattctaactagcacaaggagtgttaggctatgagtcttaatgtagcaacatataaaggatagatggggagc 6504449  T
Q  387 ccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataaa 484  Q
    |||||||  ||||||||||||||| ||| |||||||  ||||||||||||||||||  ||| || || | |||||| ||||||| | |||||||||||    
T  6504448 ccccaatggaaaacccatacatccgtgcatcaaagacaaaatccaaaaaacttataagaaacacatcctaacaaagggttatcttcgaaatcaataaa 6504351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 282 - 436
Target Start/End: Original strand, 615054 - 615209
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||||||||||||||| | | ||||||||||||| |||||||| | || || |||| |||| |||||||| ||||||||||||||||||||    
T  615054 aaaagttaaaatggaatttattaaaatcgaaatgaatcttaactagcacaagaagtgctatgctaggagtcttaaagtagcaacatacaaaggatagatg 615153  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaa 436  Q
     | ||||||||||  |||| ||||||| || ||  |||||||| ||||||||||||    
T  615154 gggagcccccaatggaaaatccatacacccgtgaatcaaagaaaaaatccaaaaaa 615209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 644 - 727
Target Start/End: Complemental strand, 17896195 - 17896112
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttg 727  Q
    |||||||| |||| |||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  17896195 taattaattaaaaatttctcccttttgagtctcaacaaattctccagttgccaatttctttctctcaactacaagatgagtttg 17896112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 644 - 728
Target Start/End: Complemental strand, 727118 - 727034
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| || ||| ||| |||||| |||| |||||| ||||||||    
T  727118 taattaatgatacttttctcccctttgaggctcaacaaattcttcaattgccattttttttctcccaattacaagacgagtttgt 727034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 282 - 481
Target Start/End: Original strand, 34653204 - 34653406
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| || ||||||| || || |||   ||| ||||| ||  |||| ||||||||||||||    
T  34653204 aaaagttaaaatggaatttattaaaatcgcaatgaatcttaacgagtacaaggagtgctacgcttgaagtcttaaaatagtaacaaacaaaggatagatg 34653303  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaag--aataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatc 478  Q
    || || || |||| |||||| |||||| || ||  ||||||  || ||||||||||||  ||||| ||| ||||| | |||||| ||||| ||| |||||    
T  34653304 aggagtcctcaatgaaaaactcatacacccgtgaatcaaagaaaaaaaatccaaaaaaactataggaaacacctcctaacaaagggttatatccgaaatc 34653403  T
Q  479 aat 481  Q
    |||    
T  34653404 aat 34653406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 282 - 407
Target Start/End: Original strand, 34117413 - 34117539
Alignment:
Q  282 aaaagctaaaatggaatttattaaattg-caatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||||||||||| |||||||||||    |||| ||||||||| |||||||||| || || |||| |||| ||| | || ||||||||||||||||||||    
T  34117413 aaaagctaaaatgaaatttattaaaaccacaattaatcttaaccagcacaaggagtgctaagctaagagtcttacaatagcaacatacaaaggatagatg 34117512  T
Q  381 agaagcccccaataaaaaacccataca 407  Q
     ||||||| ||||  || |||||||||    
T  34117513 ggaagccctcaatggaagacccataca 34117539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 447
Target Start/End: Complemental strand, 27340388 - 27340221
Alignment:
Q  282 aaaagctaaaatggaatttattaaattg-caatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||| |||||||| ||||||||||| || ||||||||| ||||  |||||| || || ||| ||| |||| |||||||| ||||||| ||||||||||||    
T  27340388 aaaaactaaaatgaaatttattaaaatggcaatgaatcctaaccggcacaaagagtgctagactacgagtcttaaagtagcaacataaaaaggatagatg 27340289  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaa-taaatccaaaaaacttatagaaaa 447  Q
     ||||||  ||||  ||||| ||||||  | ||| ||||| ||  ||||||||||||| |||| ||||    
T  27340288 ggaagccttcaatggaaaactcatacactcgtgcatcaaataagaaaatccaaaaaacctataaaaaa 27340221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 14351850 - 14351759
Alignment:
Q  284 aagctaaaatggaatttatt-aaattgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaagga 374  Q
    ||||||||||| |||||||| ||| ||||| ||||| || | |||||||||| || ||| ||| || | |||||||| ||||||||||||||    
T  14351850 aagctaaaatgaaatttattcaaaatgcaaagaatcctagcgagcacaaggaatgctagactaggaatcttaaagtagcaacatacaaagga 14351759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 26237271 - 26237186
Alignment:
Q  322 acaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgagaagcccccaataaaaaacccataca 407  Q
    ||||||||||||| | |||| | | |||| ||||| || ||| |||||||||||| ||||| || ||| |||||||||| ||||||    
T  26237271 acaagcacaaggagttttagacgaggagtcttaaaatagcaatatacaaaggataaatgaggagtcccaaataaaaaactcataca 26237186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 282 - 492
Target Start/End: Original strand, 10408139 - 10408350
Alignment:
Q  282 aaaagctaaaatggaatttattaaattg-caatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||||||||||||||| |  |||| ||||||||| |||| ||||| ||||||||||  ||| ||| |||  |||||||||||| |||||||    
T  10408139 aaaagataaaatggaatttattaaaatcacaataaatcttaaccagcaaaaggagtgttaggctagaagtcttagagttgcaacatacaaagcatagatg 10408238  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaa 480  Q
     | ||||||||||  |||||||||||| |||||  |||||||  ||||||||||||| ||||| ||| ||||| | |||||| ||||||||| |||||||    
T  10408239 gggagcccccaatggaaaacccatacacccatgaatcaaagataaaatccaaaaaacctataggaaacacctcctaacaaagggttatctccgaaatcaa 10408338  T
Q  481 taaatagaaaca 492  Q
    ||||||||||||    
T  10408339 taaatagaaaca 10408350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 281 - 491
Target Start/End: Original strand, 5993936 - 5994148
Alignment:
Q  281 taaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagat 379  Q
    |||||||||||||||||||||||||| | ||||||||||||||  |||||||||| || ||||||| |||| |||||||| |||||||||||||||||||    
T  5993936 taaaagctaaaatggaatttattaaaatcgcaatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaaggatagat 5994035  T
Q  380 gagaagcccccaataaaaaacccatacatccatgcttcaaagaataaa-tccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatc 478  Q
    | | | || |||||  |||||||||||| || ||| |||||||| ||| |||||||||| ||||| |||  |||| | |||||||| ||| | | |||||    
T  5994036 ggggaacctccaatggaaaacccatacacccgtgcatcaaagaaaaaattccaaaaaacctataggaaacgcctcctaacaaagagctatattcgaaatc 5994135  T
Q  479 aataaatagaaac 491  Q
    |||| ||||||||    
T  5994136 aatagatagaaac 5994148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 282 - 492
Target Start/End: Original strand, 20860612 - 20860821
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||| | |||| |||||||| ||||||||||||||||||||    
T  20860612 aaaagttaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgttaggcgaggagtcttaaagtagcaacatacaaaggatagatg 20860711  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaa 480  Q
     | ||| ||||||  ||||| ||||||    ||  |||||||| |||||||||| || ||||| |||  |||| | | |||| | ||||||| ||| |||    
T  20860712 gggagctcccaatggaaaactcatacacaagtgaatcaaagaa-aaatccaaaacac-tataggaaacgcctcctaaaaaagggctatctccgaaaccaa 20860809  T
Q  481 taaatagaaaca 492  Q
    ||||||||||||    
T  20860810 taaatagaaaca 20860821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 6443326 - 6443423
Alignment:
Q  284 aagctaaaatggaatttattaaattg-caatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||||||||| ||||||||||| |  ||||||||| |||| |||||||||| || ||||||| |||| |||  ||| ||||||||||| ||||||||    
T  6443326 aagctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggagtgctaggctaggagtcttatcgtagcaacatacaaatgatagatg 6443423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 315 - 492
Target Start/End: Complemental strand, 23055046 - 23054869
Alignment:
Q  315 aatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgagaagcccccaataaaaaacccatacatccatgc 414  Q
    ||||||||| |||||||||| |||||||||| |||| ||||| ||  |||||||||||||||||||||||||| | ||| ||||| ||||||| || ||     
T  23055046 aatcttaaccagcacaaggagtgttaggctaagagtcttaaaatagtaacatacaaaggatagatgagaagccgctaatgaaaaatccatacacccgtga 23054947  T
Q  415 ttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataaatagaaaca 492  Q
    ||||||||| ||||||| ||||| ||||||||| ||||| | ||||||  |||||||||||| | |||||||||||||    
T  23054946 ttcaaagaaaaaatccataaaacctatagaaaacacctcctaacaaaggattatctccaaaaactataaatagaaaca 23054869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 284 - 380
Target Start/End: Complemental strand, 24958360 - 24958263
Alignment:
Q  284 aagctaaaatggaatttattaaa-ttgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||| |||||||||||||||||| |||||||||||| | || |||||||||| || ||||||| |||| |||||||| ||||||||||||||||||||    
T  24958360 aagcgaaaatggaatttattaaaattgcaatgaatcctgaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaaggatagatg 24958263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 644 - 727
Target Start/End: Complemental strand, 40757430 - 40757347
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttg 727  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||  |||||||| ||||    
T  40757430 taattaatgaaatttttctcccttttgaggctcaacaaattcttcaattgtcaatttctttctctcaattgcaagatgaatttg 40757347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 278 - 407
Target Start/End: Complemental strand, 47519246 - 47519118
Alignment:
Q  278 ttataaaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggata 376  Q
    |||||||| ||||||||||||||||||| ||  |||| ||||||||| |||||||||| ||||||| || |||| ||| | || ||||| |||||||||     
T  47519246 ttataaaa-ctaaaatggaatttattaagataacaataaatcttaaccagcacaaggagtgttaggttaagagtcttacactagcaacaaacaaaggat- 47519149  T
Q  377 gatgagaagcccccaataaaaaacccataca 407  Q
    |||| ||||||||||||  ||||||||||||    
T  47519148 gatgggaagcccccaatggaaaacccataca 47519118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 282 - 492
Target Start/End: Complemental strand, 14566796 - 14566577
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaac------aagcacaaggactgttaggctatgagttttaaagtaacaacatacaaagga 374  Q
    |||||||||||| |||| ||||||| | |||||||||||||||      ||||||||||| || |||| || |||| ||||| || ||||||||||| ||    
T  14566796 aaaagctaaaatagaatgtattaaaatcgcaatgaatcttaaccagcacaagcacaaggagtgctaggttaggagtcttaaaatagcaacatacaaatga 14566697  T
Q  375 tagatgagaagcccccaataaaaaacccatacatccatgcttcaaag--aataaatccaaaaaacttatagaaaagacctcattacaaagagttatctcc 472  Q
    |||||| | ||||||||||  ||| | |||||| || ||  ||||||  || ||||||||||| | ||||| |||  |||| | |||||| | |||||||    
T  14566696 tagatggggagcccccaatggaaacctcatacacccgtgaatcaaagaaaaaaaatccaaaaaccctataggaaacgcctcctaacaaagggctatctcc 14566597  T
Q  473 aaaatcaataaatagaaaca 492  Q
     |||||| ||||||||||||    
T  14566596 gaaatcagtaaatagaaaca 14566577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 284 - 492
Target Start/End: Original strand, 53201582 - 53201788
Alignment:
Q  284 aagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgag 382  Q
    ||||||||||||||||| |||| || ||||| |||||||||  ||||||||| |||||||||| |||| ||| |||||||| | ||||||||| |||| |    
T  53201582 aagctaaaatggaatttgttaatatagcaattaatcttaaccggcacaaggaatgttaggctaggagtcttacagtaacaataaacaaaggat-gatg-g 53201679  T
Q  383 aagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaata 482  Q
    || ||||||||  |||| ||||||| || ||     ||  | |||||| |||||| ||||| ||| ||||| | |||||| | ||||||| |||||||||    
T  53201680 aaacccccaatggaaaatccatacacccgtgaaaataaataaaaatcc-aaaaacctataggaaacacctcctaacaaagggctatctccgaaatcaata 53201778  T
Q  483 aatagaaaca 492  Q
    ||||||||||    
T  53201779 aatagaaaca 53201788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 644 - 712
Target Start/End: Original strand, 7103020 - 7103088
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaat 712  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||||| || | |||||||||||||||||    
T  7103020 taattaatgaaacttttctcccttttaaggctcaacaaattcttcaattgctaatttctttctctcaat 7103088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 282 - 407
Target Start/End: Complemental strand, 31360857 - 31360732
Alignment:
Q  282 aaaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||||||||||| |||||||||| ||  || ||||||||| | |||||||||| |||||||| |  ||| ||| |||| ||||| ||||| ||| ||||    
T  31360857 aaaagctaaaatgaaatttattaagataacactgaatcttagccagcacaaggagtgttaggccagaagtcttatagtagcaacacacaaatgat-gatg 31360759  T
Q  381 agaagcccccaataaaaaacccataca 407  Q
     |||||||||||| |||||||||||||    
T  31360758 ggaagcccccaatgaaaaacccataca 31360732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 728
Target Start/End: Complemental strand, 11423800 - 11423716
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||||||||| | ||||||||| ||||||| | ||||||||||||| || ||||||| | ||||| ||| ||||||||| |||||    
T  11423800 taattaatgacatttttctcccttttgaggttgaacaaattcttcaattgccaatttttctctcttaattacaagatgaatttgt 11423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 34227771 - 34227681
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaa 371  Q
    |||| ||||||||||| |||||||  | ||||||||||||||| ||||||| |  |||||||||| |||| |||||||| ||||| |||||    
T  34227771 aaaaactaaaatggaacttattaatctcgcaatgaatcttaaccagcacaaagcgtgttaggctaagagtcttaaagtagcaacaaacaaa 34227681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 447
Target Start/End: Original strand, 6409335 - 6409481
Alignment:
Q  304 aaattgcaatgaatcttaacaagcacaaggactgttaggc----tatgagttttaaagtaacaacatacaaaggatagatgagaagcccccaataaaaaa 399  Q
    ||||| |||||||| |||||| | | ||||| ||||||||    || |||| |||||||| ||||||| |||||||||  |||| ||| |||||  ||||    
T  6409335 aaattacaatgaatgttaacatgtataaggagtgttaggcgcgctaggagtattaaagtagcaacatataaaggatagtggaga-gcctccaatggaaaa 6409433  T
Q  400 cccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaa 447  Q
    |||||||| || ||| |||||||  | || |||||||| |||||||||    
T  6409434 cccatacacccgtgcatcaaagataatattcaaaaaacctatagaaaa 6409481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 288 - 484
Target Start/End: Complemental strand, 6231 - 6034
Alignment:
Q  288 taaaatggaatttattaaattg-caatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgagaagc 386  Q
    |||||| |||||||||||| |  ||||||||  |||| |||||||||| ||||||||||||||| |||| ||| ||||||| |||||||||||| | |||    
T  6231 taaaatagaatttattaaaatcacaatgaattctaactagcacaaggagtgttaggctatgagtcttaatgtagcaacatataaaggatagatggggagc 6132  T
Q  387 ccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataaa 484  Q
    |||||||  ||||||||||||||| ||| |||||||  ||||||||||||||||||  ||| || || | |||||| ||||||| | |||||||||||    
T  6131 ccccaatggaaaacccatacatccgtgcatcaaagacaaaatccaaaaaacttataagaaacacatcctaacaaagggttatcttcgaaatcaataaa 6034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 9e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 282 - 490
Target Start/End: Original strand, 17374629 - 17374837
Alignment:
Q  282 aaaagctaaaatggaatttattaaattg-caatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||| |||||||| ||||||||||| |  |||||||||||||| |||||||||| ||||| |||| |||| |||||| | ||| ||||||||||||||||    
T  17374629 aaaaactaaaatgaaatttattaaaatcacaatgaatcttaaccagcacaaggagtgttaagctaggagtcttaaag-agcaatatacaaaggatagatg 17374727  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaa 480  Q
     | |||||| ||| |||||| |||||| || ||  |||||||| ||||||||||||| ||||| |||  |||| | | | || | ||||||| |||||||    
T  17374728 gggagcccctaatgaaaaactcatacacccgtgaatcaaagaaaaaatccaaaaaacctataggaaacgcctcctaagagagggctatctccgaaatcaa 17374827  T
Q  481 taaatagaaa 490  Q
    ||||||||||    
T  17374828 taaatagaaa 17374837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 282 - 408
Target Start/End: Original strand, 34659580 - 34659710
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaagga---ctgttaggctatgagttttaaagtaacaacatacaaaggatag 377  Q
    ||||||||||||| ||||||||||| | ||||||||||||||| ||||| ||||   ||| |||| || |||| |||||||| |||||||||||||||||    
T  34659580 aaaagctaaaatgaaatttattaaaatcgcaatgaatcttaaccagcacgaggagtgctgctaggttaggagtcttaaagtagcaacatacaaaggatag 34659679  T
Q  378 atgagaagcccccaataaaaaacccatacat 408  Q
    ||||| ||| ||||||| |||||||||||||    
T  34659680 atgaggagctcccaatagaaaacccatacat 34659710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 282 - 490
Target Start/End: Complemental strand, 11163842 - 11163636
Alignment:
Q  282 aaaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||| ||||||||||||||||||| || || |||||||||||| || ||| ||| || |||| || |||| ||||||||  |||||| ||||||||||||    
T  11163842 aaaaactaaaatggaatttattaacatcgcgatgaatcttaaccagtacagggagtgctaggttaggagtcttaaagtagtaacatataaaggatagatg 11163743  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaa 480  Q
    |||||   ||||| |||||| |||||| || ||  | ||| || |||   ||||||||||||||||| ||||| | |||||| | ||| |||||||||||    
T  11163742 agaag-atccaatgaaaaactcatacacccgtgaataaaaaaaaaaa--aaaaaaacttatagaaaacacctcctaacaaagggctatatccaaaatcaa 11163646  T
Q  481 taaatagaaa 490  Q
    ||||||||||    
T  11163645 taaatagaaa 11163636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 282 - 393
Target Start/End: Original strand, 4868943 - 4869055
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||| |||||||| ||||||||||| | | ||||||||||||  |||||||||| || ||||||| |||| |||||||| |||||||||||||||||| |    
T  4868943 aaaaactaaaatgaaatttattaaaatcgaaatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaaggatagacg 4869042  T
Q  381 agaagcccccaat 393  Q
     | ||||||||||    
T  4869043 gggagcccccaat 4869055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 282 - 413
Target Start/End: Complemental strand, 1552381 - 1552251
Alignment:
Q  282 aaaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| |||||| ||||||||||| || ||||||||||||||| |||||||||| || ||||||| |||| ||| |||| ||||| ||||||||| | ||    
T  1552381 aaaagttaaaatagaatttattaagatagcaatgaatcttaacgagcacaaggagtgctaggctaagagtcttacagtagcaacaaacaaaggat-ggtg 1552283  T
Q  381 agaagcccccaataaaaaacccatacatccatg 413  Q
     ||||| ||||||  |||||||||||| |||||    
T  1552282 ggaagctcccaat-gaaaacccatacacccatg 1552251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 282 - 375
Target Start/End: Original strand, 1894739 - 1894833
Alignment:
Q  282 aaaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggat 375  Q
    |||||||||||| ||||||||||| || ||||||||| ||||| |||||||||| |||||||||| |||| |||  ||| ||||| |||||||||    
T  1894739 aaaagctaaaatagaatttattaagatagcaatgaattttaaccagcacaaggagtgttaggctaggagtcttacggtagcaacaaacaaaggat 1894833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 288 - 492
Target Start/End: Complemental strand, 17282727 - 17282524
Alignment:
Q  288 taaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgagaagc 386  Q
    |||||||||||||||||| ||  |||| ||||||||| ||||||| || || ||||||| |||| |||  ||| ||||| ||||||||| |||| |||||    
T  17282727 taaaatggaatttattaagataacaattaatcttaaccagcacaaagagtgctaggctaggagtcttacggtagcaacaaacaaaggat-gatgggaagc 17282629  T
Q  387 ccccaataaaaaacccatacatccatg-cttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataaat 485  Q
    |||||||  ||||| |||||| || ||     |||||| |||||| |||||| ||||| |||  |||| | |||||| | ||||||| ||||||||||||    
T  17282628 ccccaatgtaaaactcatacacccgtgaaaataaagaa-aaatcc-aaaaacctataggaaacgcctcctaacaaagggctatctccgaaatcaataaat 17282531  T
Q  486 agaaaca 492  Q
    |||||||    
T  17282530 agaaaca 17282524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 644 - 689
Target Start/End: Complemental strand, 27727729 - 27727684
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttca 689  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  27727729 taattaatgaaatttttctcccttttgaggctcaacaaattcttca 27727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 30799263 - 30799326
Alignment:
Q  283 aaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggcta 345  Q
    |||| ||||||| ||||||||||| | ||||||||||||||| |||||||| | ||||||||||    
T  30799263 aaagttaaaatgaaatttattaaaatcgcaatgaatcttaaccagcacaagaagtgttaggcta 30799326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 282 - 492
Target Start/End: Complemental strand, 27170921 - 27170708
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||| ||||||||||| | ||||||||||||||| |||||||||| || ||||||| |||| ||||| || ||||||||||||||||||||    
T  27170921 aaaagttaaaatg-aatttattaaaatcgcaatgaatcttaaccagcacaaggagtgataggctaggagtcttaaa-tagcaacatacaaaggatagatg 27170824  T
Q  381 agaagcccccaataaaaaacccatacat----ccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaa 476  Q
     | ||||| ||||  |||||||||||||    ||| |  |||||||| |||||| |||||| ||||| |||  |||| | |||||  | ||||||| |||    
T  27170823 gggagccctcaatggaaaacccatacatacacccaagaatcaaagaaaaaatccgaaaaacctataggaaacgcctcctaacaaatggctatctccgaaa 27170724  T
Q  477 tcaataaatagaaaca 492  Q
     |||||||||||||||    
T  27170723 ccaataaatagaaaca 27170708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 282 - 492
Target Start/End: Original strand, 1377541 - 1377753
Alignment:
Q  282 aaaagctaaaatggaatttatt-aaattgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||| |||||||| |||| ||||| ||||||||| |||||||||| ||||||| || |||| |||||||||||||||||||| ||||||||    
T  1377541 aaaagttaaaatgaaatttattcaaatcgcaattaatcttaaccagcacaaggaatgttaggttaggagtcttaaagtaacaacatacaaatgatagatg 1377640  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaag-aataaatccaaaaaacttatag--aaaagacctcattacaaagagttatctccaaaat 477  Q
     | ||  || |||  || ||||||||| |||||  |||||| || ||||||||||||| |||||  ||||  |||| | ||||||  |||||||| ||||    
T  1377641 gggag-tcctaatggaagacccatacacccatgaatcaaagaaaaaaatccaaaaaac-tataggaaaaacgcctcctaacaaaggattatctccgaaat 1377738  T
Q  478 caataaatagaaaca 492  Q
     ||||||||||||||    
T  1377739 taataaatagaaaca 1377753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 288 - 492
Target Start/End: Complemental strand, 6031126 - 6030920
Alignment:
Q  288 taaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaa-gtaacaacatacaaaggatagatgagaag 385  Q
    ||||||| ||||||||||| | | ||||||||||||| ||||||| || ||||||||||| ||| ||||| |||  ||||||||||||||||| | | ||    
T  6031126 taaaatgaaatttattaaaatcgaaatgaatcttaaccagcacaaagagtgttaggctataagtcttaaaagtagtaacatacaaaggatagacggggag 6031027  T
Q  386 cccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataaat 485  Q
    | ||||||  |||||||||||| || ||  ||||| || ||||||||||||||||||| |||  |||| |  ||||| |  |||||  |||||||| |||    
T  6031026 ctcccaatggaaaacccatacacccgtgaatcaaataaaaaatccaaaaaacttataggaaacgcctcctagcaaagggccatctctgaaatcaattaat 6030927  T
Q  486 agaaaca 492  Q
    |||||||    
T  6030926 agaaaca 6030920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 7269968 - 7270066
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagat 379  Q
    ||||||||||||  ||||||||||| | ||||||||||||||| |||||||||| || ||||||| |||| |||||||| |||||||||||||||||||    
T  7269968 aaaagctaaaataaaatttattaaaatcgcaatgaatcttaaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaaggatagat 7270066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 26656041 - 26656154
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| |||||||| | || ||||||| |||| |||||||| ||| ||||||||||||||||    
T  26656041 aaaaggtaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctaggctaggagtcttaaagtatcaatatacaaaggatagatg 26656140  T
Q  381 agaagcccccaata 394  Q
     | |||||| ||||    
T  26656141 gggagcccctaata 26656154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 26927628 - 26927741
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| |||||||| | || ||||||| |||| |||||||| ||| ||||||||||||||||    
T  26927628 aaaaggtaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctaggctaggagtcttaaagtatcaatatacaaaggatagatg 26927727  T
Q  381 agaagcccccaata 394  Q
     | |||||| ||||    
T  26927728 gggagcccctaata 26927741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 38959391 - 38959301
Alignment:
Q  283 aaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaag 372  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||||| || ||||||| |||| ||| |||| ||||| ||||||    
T  38959391 aaagctaaaatggaatttattaagatagcaatgaatcttaactagcacaaggagtgctaggctaagagtcttacagtagcaacaaacaaag 38959301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 286 - 407
Target Start/End: Original strand, 21600515 - 21600638
Alignment:
Q  286 gctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctat--gagttttaaagtaacaacatacaaaggatagatgag 382  Q
    |||||||||||||||||||| || ||||||||||||||| || ||||||| |||||||||||  |||| |||  ||| ||||| ||||| ||| |||| |    
T  21600515 gctaaaatggaatttattaagatagcaatgaatcttaaccagtacaaggagtgttaggctatgagagtcttaccgtagcaacaaacaaatgat-gatggg 21600613  T
Q  383 aagcccccaataaaaaacccataca 407  Q
    |||||||||||  ||||||||||||    
T  21600614 aagcccccaatggaaaacccataca 21600638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 399
Target Start/End: Complemental strand, 1157986 - 1157868
Alignment:
Q  282 aaaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgt-taggctatgagttttaaagtaacaacatacaaaggatagat 379  Q
    ||||| |||||||||||||||||| || ||||| ||||||||| |||||||| | ||| ||||||| |||| ||| |||| ||||| | ||||||| |||    
T  1157986 aaaagttaaaatggaatttattaagatagcaataaatcttaaccagcacaagcagtgtctaggctaggagtcttacagtagcaacaaataaaggat-gat 1157888  T
Q  380 gagaagcccccaataaaaaa 399  Q
    | |||||||||||| |||||    
T  1157887 gggaagcccccaatgaaaaa 1157868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 18696319 - 18696418
Alignment:
Q  282 aaaagctaaaatggaatttattaaattg-caatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||||||||||| ||||||||||| || ||||||||||||||  |||||| ||  ||||||||| |||||||| | || |||||| |||| ||||||||    
T  18696319 aaaagctaaaatgaaatttattaaaatggcaatgaatcttaaccggcacaacgagagttaggctaggagttttacaatagcaacatgcaaacgatagatg 18696418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 722
Target Start/End: Complemental strand, 15909024 - 15908971
Alignment:
Q  669 tgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatga 722  Q
    ||||||||||||||||||||| ||  |||||||||| ||||||| |||||||||    
T  15909024 tgaggctcaacaaattcttcaattgtcaatttctttatctcaattacaagatga 15908971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 492
Target Start/End: Complemental strand, 7767686 - 7767625
Alignment:
Q  431 aaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataaatagaaaca 492  Q
    ||||||| ||||| |||  |||| | |||||| ||||||||||||||||||||||| |||||    
T  7767686 aaaaaacctataggaaacgcctcctaacaaagggttatctccaaaatcaataaatataaaca 7767625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 644 - 728
Target Start/End: Complemental strand, 14070770 - 14070686
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| || | ||||||||||| |||||| |||||||| |||||    
T  14070770 taattaatgaaatttttctcccttttgaggctcaacaaattcttcaattgcaaatttctttctttcaatcgcaagatgactttgt 14070686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 644 - 728
Target Start/End: Complemental strand, 14380798 - 14380714
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| || | ||||||||||| |||||| |||||||| |||||    
T  14380798 taattaatgaaatttttctcccttttgaggctcaacaaattcttcaattgcaaatttctttctttcaatcgcaagatgactttgt 14380714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 282 - 492
Target Start/End: Original strand, 29549910 - 29550121
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||| |||||||  ||||||||||| | |||||||||||||||  | | || || ||||  |||| |||| |||||||| ||||||| ||||||||||||    
T  29549910 aaaaactaaaataaaatttattaaaatcgcaatgaatcttaaccggtataaagagtgtttcgctaggagtcttaaagtagcaacatataaaggatagatg 29550009  T
Q  381 agaagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaact-tatagaaaagacctcattacaaagagttatctccaaaatca 479  Q
       |||||| ||| ||||  |||||||  ||||  |||||||| |||| ||||||| | |||||||||  |||||| |||||| | ||||||| ||||||    
T  29550010 gagagcccc-aatgaaaagtccatacacgcatgaatcaaagaaaaaattcaaaaaaatatatagaaaacgcctcataacaaagggctatctccgaaatca 29550108  T
Q  480 ataaatagaaaca 492  Q
    |||||||||||||    
T  29550109 ataaatagaaaca 29550121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 644 - 728
Target Start/End: Complemental strand, 11791576 - 11791492
Alignment:
Q  644 taattaatgaaaattttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||| ||  ||||||||||||| ||||  |||||||| |||||    
T  11791576 taattaattaaatttttctcccttttgaggctcaacaaattcttcaattgtcaatttctttctcgcaattgcaagatgaatttgt 11791492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 281 - 492
Target Start/End: Original strand, 1777891 - 1778104
Alignment:
Q  281 taaaagctaaaatggaatttattaaattgcaa-tgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagat 379  Q
    |||||||||||||||||||| ||||| | ||| ||||||||||| |||| ||||| || || |||| ||||    ||||| |||||||||||| ||||||    
T  1777891 taaaagctaaaatggaatttcttaaaattcaaatgaatcttaaccagcataaggagtgctaagctaagagt----aagtagcaacatacaaagaatagat 1777986  T
Q  380 gagaagcccccaataaaaaaccc--atacatccatgcttcaaag--aataaatccaaa-aaacttatagaaaagacctcattacaaagagttatctccaa 474  Q
    | | ||||||||||  |||||||  |||||  | ||| ||||||  || ||||||||| || | ||||| |||  |||| |  ||||||||||||||  |    
T  1777987 ggggagcccccaatggaaaacccatatacactcgtgcatcaaagaaaaaaaatccaaacaaccctataggaaatgcctcgtatcaaagagttatctctga 1778086  T
Q  475 aatcaataaatagaaaca 492  Q
    ||||||||||||||||||    
T  1778087 aatcaataaatagaaaca 1778104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 26199187 - 26199273
Alignment:
Q  289 aaaatggaatttattaaa-ttgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaagga 374  Q
    |||||||||||||||||| || ||||||||| ||||||||||||||| || ||| ||| ||||  ||||||| ||| ||||||||||    
T  26199187 aaaatggaatttattaaaattacaatgaatcctaacaagcacaaggaatgctagactaggagtcgtaaagtagcaatatacaaagga 26199273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 407
Target Start/End: Complemental strand, 11699137 - 11699013
Alignment:
Q  282 aaaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||| |||||||||||||||| || ||  ||||||||||||||   |||||||| || |||| || |||| ||| |||| ||||| ||||||||| |||     
T  11699137 aaaaactaaaatggaatttatgaagataacaatgaatcttaaccgccacaaggagtgctaggttaagagtcttatagtagcaacaaacaaaggat-gat- 11699040  T
Q  381 agaagcccccaataaaaaacccataca 407  Q
    ||||||||| |||| ||||||||||||    
T  11699039 agaagccccaaatagaaaacccataca 11699013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 492
Target Start/End: Original strand, 3301737 - 3301953
Alignment:
Q  281 taaaagctaaaatggaatttattaaatt-gcaatgaatctt-aacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggataga 378  Q
    |||||| ||||||| ||||||||||| | |||||||||||| ||| |||||||||| | ||| | ||  ||| |||||||| ||||||| ||| ||||||    
T  3301737 taaaagttaaaatgaaatttattaaaatcgcaatgaatctttaaccagcacaaggagtattaaggtagaagtcttaaagtagcaacatataaatgataga 3301836  T
Q  379 tgagaagcccccaataaaaaacccatacatccatgcttcaaag--aataaatccaaaaaacttatagaaaagacctcat-tacaaagagttatctccaaa 475  Q
    || | ||| || |||  |||||||||||| |  ||  ||||||  || |||||| ||||||||| || |||  |||| |  |||||  | |||||| |||    
T  3301837 tggggagctcctaatggaaaacccatacacctgtgaatcaaagaaaaaaaatcctaaaaacttagaggaaacgcctcctaaacaaatggctatctctaaa 3301936  T
Q  476 atcaataaatagaaaca 492  Q
    |||||||||||||||||    
T  3301937 atcaataaatagaaaca 3301953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 670 - 728
Target Start/End: Complemental strand, 9112847 - 9112789
Alignment:
Q  670 gaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||||||||||||||||| |||| ||||||||||||   |||| ||||||||| |||||    
T  9112847 gaggctcaacaaattctttagttgccaatttctttcgagcaattacaagatgattttgt 9112789  T

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Target: scaffold0009 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 284 - 484
Target Start/End: Original strand, 53778 - 53979
Alignment:
Q  284 aagctaaaatggaatttattaaa-ttgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgag 382  Q
    |||| ||||| ||||| |||||| || ||||||||| |||| ||||||| |  |||||||||| ||||  ||||||| |||||||||| ||||||||| |    
T  53778 aagccaaaatagaattgattaaaattacaatgaatcataaccagcacaatgcgtgttaggctaggagtcgtaaagtagcaacatacaatggatagatggg 53877  T
Q  383 aagcccccaataaaaaacccatacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaata 482  Q
     ||| ||||||   |||| |||||| || ||| |||||||  |||| |||||||| || || ||| | ||| | |||||| | |||||||||||||||||    
T  53878 gagcacccaattgtaaactcatacacccgtgcatcaaagacaaaattcaaaaaacctacaggaaacatctcctaacaaagggatatctccaaaatcaata 53977  T
Q  483 aa 484  Q
    ||    
T  53978 aa 53979  T

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Target: scaffold0005 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 282 - 492
Target Start/End: Original strand, 250579 - 250798
Alignment:
Q  282 aaaagctaaaatggaatttattaaatt-gcaatgaatcttaac------aagcacaaggactgttaggctatgagttttaaagtaacaacatacaaagga 374  Q
    |||||||||||| |||| ||||||| | |||||||||||||||      ||||||||||| || |||| || |||| ||||| || ||||||||||| ||    
T  250579 aaaagctaaaatagaatgtattaaaatcgcaatgaatcttaaccagcacaagcacaaggagtgctaggttaggagtcttaaaatagcaacatacaaatga 250678  T
Q  375 tagatgagaagcccccaataaaaaacccatacatccatgcttcaaag--aataaatccaaaaaacttatagaaaagacctcattacaaagagttatctcc 472  Q
    |||||| | ||||||||||  ||| | |||||| || ||  ||||||  || ||||||||||| | ||||| |||  |||| | |||||| | |||||||    
T  250679 tagatggggagcccccaatggaaacctcatacacccgtgaatcaaagaaaaaaaatccaaaaaccctataggaaacgcctcctaacaaagggctatctcc 250778  T
Q  473 aaaatcaataaatagaaaca 492  Q
     |||||| ||||||||||||    
T  250779 gaaatcagtaaatagaaaca 250798  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 304 - 487
Target Start/End: Complemental strand, 34214171 - 34213987
Alignment:
Q  304 aaattgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaa-caacatacaaaggatagatgagaagcccccaataaaaaaccc 402  Q
    |||| ||||||||||||| | ||||||| || || ||| | |||||| ||||||||| ||||||||||||||||  |||| |||| |||||  ||||| |    
T  34214171 aaatcgcaatgaatcttagccagcacaaagagtgctagaccatgagtcttaaagtaaacaacatacaaaggatatgtgaggagcctccaatggaaaactc 34214072  T
Q  403 atacatccatgcttcaaagaataaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataaatag 487  Q
    ||||| |  ||  |||||||| ||||| ||||||| |||||||||  |||| | ||||||   ||||||| ||| ||||||||||    
T  34214071 atacacctgtgaatcaaagaaaaaatcaaaaaaacctatagaaaatgcctcctaacaaaggactatctccgaaaacaataaatag 34213987  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 288 - 380
Target Start/End: Original strand, 21880758 - 21880850
Alignment:
Q  288 taaaatggaatttattaaatt-gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    ||||||| ||||||||||| | ||||||||||||||| |||||||||| || ||||||| || | |||||| ||||||||||||||||| ||||    
T  21880758 taaaatgaaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgctaggctaggaatcttaaag-aacaacatacaaaggatggatg 21880850  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 410
Target Start/End: Original strand, 1869250 - 1869377
Alignment:
Q  282 aaaagctaaaatggaatttattaa-attgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatg 380  Q
    |||||||||||||||||||||||| ||  |||||||||||||| |||||||||| |  ||||||  |||| ||| | || ||||| ||||||||| ||||    
T  1869250 aaaagctaaaatggaatttattaagataacaatgaatcttaaccagcacaaggaatactaggctcggagtcttacattagcaacaaacaaaggat-gatg 1869348  T
Q  381 agaagcccccaataaaaaacccatacatcc 410  Q
     |||| |||||||  ||||| |||||||||    
T  1869349 ggaag-ccccaatgtaaaactcatacatcc 1869377  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 20739951 - 20740039
Alignment:
Q  309 gcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacatacaaaggatagatgagaagcccccaataaaaa 398  Q
    ||||||||||||||| |||||||||| ||||| |||| |||| ||| |||| ||||| ||||||||| | || |||||||||||| ||||    
T  20739951 gcaatgaatcttaaccagcacaaggagtgttaagctaggagtcttacagtagcaacaaacaaaggatggttg-gaagcccccaatgaaaa 20740039  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 492
Target Start/End: Complemental strand, 3524220 - 3524153
Alignment:
Q  425 aaatccaaaaaacttatagaaaagacctcattacaaagagttatctccaaaatcaataaatagaaaca 492  Q
    ||||||||||||  ||||| |||  |||| | |||||| | |||||||||||||||||||||||||||    
T  3524220 aaatccaaaaaatctataggaaacgcctcttaacaaagggctatctccaaaatcaataaatagaaaca 3524153  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 24046085 - 24046002
Alignment:
Q  284 aagctaaaatggaatttattaaattgcaatgaatcttaacaagcacaaggactgttaggctatgagttttaaagtaacaacata 367  Q
    |||| |||||| ||||||||||||  ||||||||| | || |||||||||| ||||||  |||||||  ||||||| |||||||    
T  24046085 aagccaaaatgaaatttattaaatcacaatgaatcctgaccagcacaaggaatgttagaatatgagtcgtaaagtagcaacata 24046002  T

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Target: scaffold0524 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 657 - 728
Target Start/End: Complemental strand, 10862 - 10791
Alignment:
Q  657 ttttctcccctttgaggctcaacaaattcttcagttcccaatttctttctctcaatcacaagatgagtttgt 728  Q
    |||| |||| |||||||||||| |||||||||| || |||||||||||||||||||  |||||||| |||||    
T  10862 ttttttcccttttgaggctcaataaattcttcaattgccaatttctttctctcaattgcaagatgaatttgt 10791  T

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