View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4178_low_12 (Length: 379)

Name: NF4178_low_12
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4178_low_12
NF4178_low_12
[»] chr4 (3 HSPs)
chr4 (39-245)||(10634128-10634339)
chr4 (25-77)||(53761465-53761517)
chr4 (31-90)||(3438335-3438394)
[»] chr5 (2 HSPs)
chr5 (309-372)||(17205597-17205660)
chr5 (16-88)||(20477753-20477825)
[»] chr1 (7 HSPs)
chr1 (143-342)||(29718792-29718994)
chr1 (143-250)||(29658765-29658872)
chr1 (143-250)||(29691280-29691387)
chr1 (143-250)||(33160696-33160803)
chr1 (175-245)||(30827304-30827374)
chr1 (31-82)||(33160869-33160920)
chr1 (25-77)||(19468185-19468237)
[»] chr6 (7 HSPs)
chr6 (16-77)||(6602876-6602937)
chr6 (31-82)||(6426855-6426906)
chr6 (145-239)||(6594411-6594505)
chr6 (16-78)||(7131983-7132045)
chr6 (16-77)||(19632785-19632846)
chr6 (16-82)||(7993853-7993919)
chr6 (15-77)||(10579425-10579487)
[»] chr8 (1 HSPs)
chr8 (25-90)||(17627736-17627801)
[»] chr3 (1 HSPs)
chr3 (21-74)||(514401-514454)
[»] chr7 (3 HSPs)
chr7 (23-77)||(10169814-10169868)
chr7 (23-77)||(10177339-10177393)
chr7 (25-83)||(15091831-15091889)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 10634128 - 10634339
Alignment:
Q  39 gttagaaactgtccttctcttagtgagatcaaaatggaatgcacgtctattg-----atgagtgtagagagttcttattcttacgatgannnnnnngaag 133  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||     | || | | |||| |||| ||||||     ||       | |     
T  10634128 gttagaaactgtccttcacttagtgagatcaaaatggaatgcacgtctattgggaaaaagaatttcgagaattctaattctttgagggattttgttggaa 10634227  T
Q  134 gacgtcgactaaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctgga 233  Q
    ||| || ||| |||||||||||||||||| ||||| |||||||| |||||||| ||||| || |||||||||||||||| ||||||||||| ||||||||    
T  10634228 gacctcaacttaagtctctttgtttggctcactgtgagctgttgggagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctgga 10634327  T
Q  234 tttgagctattg 245  Q
    |||||| |||||    
T  10634328 tttgagttattg 10634339  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 53761465 - 53761517
Alignment:
Q  25 ccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaa 77  Q
    ||||| || |||||| || |||||||||||| |||||||||||||||||||||    
T  53761465 ccttgtttgcacttgctaaaaactgtccttcacttagtgagatcaaaatggaa 53761517  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 3438335 - 3438394
Alignment:
Q  31 tttcacttgttagaaactgtccttctcttagtgagatcaaaatggaatgcacgtctattg 90  Q
    |||||||  |||| || |||||||| ||||||||||| |||||||||||||| |||||||    
T  3438335 tttcactcattagtaattgtccttcacttagtgagataaaaatggaatgcacatctattg 3438394  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 17205660 - 17205597
Alignment:
Q  309 cttgtcatacacagatgttgatgataaatcactctgtctcatctcaaagtgttttcctatgctt 372  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  17205660 cttgtcatacacagatgttgatgataaatcactctgtatcatctaaaagtgttttcctatgctt 17205597  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 20477753 - 20477825
Alignment:
Q  16 cagaattatccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaatgcacgtctat 88  Q
    |||||||| |||||  |||||| ||||||||||||||||| ||| |||||||||||||||||| ||| |||||    
T  20477753 cagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacacatctat 20477825  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 342
Target Start/End: Original strand, 29718792 - 29718994
Alignment:
Q  143 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 242  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||  |  ||||| |||||||||||||||||||||||||||| |||||||||||    
T  29718792 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagcta 29718891  T
Q  243 ttggaagggcatgtgtgaggaaattgttggtctagtattaaga---tgtcataatcttaagcatatgaacttgtcatacacagatgttgatgataaatca 339  Q
    ||||||||   ||| ||| |||| ||||  |  ||| ||||||   |||  |||  |||||||| ||||||||||||| ||  | |||||||||||||||    
T  29718892 ttggaaggaagtgtctgaagaaactgtttctaaagttttaagatgttgtactaagattaagcatttgaacttgtcatataccaacgttgatgataaatca 29718991  T
Q  340 ctc 342  Q
    |||    
T  29718992 ctc 29718994  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 29658765 - 29658872
Alignment:
Q  143 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 242  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||| |  ||||| |||||||||||||||||||||| ||||| |||||||||||    
T  29658765 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagcta 29658864  T
Q  243 ttggaagg 250  Q
    ||||||||    
T  29658865 ttggaagg 29658872  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 29691280 - 29691387
Alignment:
Q  143 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 242  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||  |  ||||| |||||||||||||||||||||||||||| |||||||||||    
T  29691280 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagcta 29691379  T
Q  243 ttggaagg 250  Q
    ||||||||    
T  29691380 ttggaagg 29691387  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 33160803 - 33160696
Alignment:
Q  143 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 242  Q
    |||||||||||| ||||||  ||||| |||  |||||||||||||||||| |  ||||| ||| ||| |||||||| ||||||||||| |||||||||||    
T  33160803 taaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgcttgatttgagcta 33160704  T
Q  243 ttggaagg 250  Q
    || |||||    
T  33160703 ttcgaagg 33160696  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 30827374 - 30827304
Alignment:
Q  175 ttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagctattg 245  Q
    |||||||||||||||||| |  |||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  30827374 ttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 30827304  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 33160920 - 33160869
Alignment:
Q  31 tttcacttgttagaaactgtccttctcttagtgagatcaaaatggaatgcac 82  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||||||||    
T  33160920 tttcacttgttacaaactgtccttcacttagtgacatcaaaatggaatgcac 33160869  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 19468185 - 19468237
Alignment:
Q  25 ccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaa 77  Q
    ||||| || |||| ||||| || |||||||| |||||||||||||||||||||    
T  19468185 ccttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaa 19468237  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 6602876 - 6602937
Alignment:
Q  16 cagaattatccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaa 77  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||    
T  6602876 cagaattatccttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatggaa 6602937  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 6426906 - 6426855
Alignment:
Q  31 tttcacttgttagaaactgtccttctcttagtgagatcaaaatggaatgcac 82  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  6426906 tttcacttgttagaaactgtccttcaattagtgagattaaaatggaaggcac 6426855  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 6594411 - 6594505
Alignment:
Q  145 aagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgag 239  Q
    ||||||||||||||||||  |||| |||  |||| ||||||||||||| |  ||||| |||| ||||||||||  |||||| |||| ||||||||    
T  6594411 aagtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 7132045 - 7131983
Alignment:
Q  16 cagaattatccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaat 78  Q
    |||||||| |||||  |||||| ||||||||||| ||||| ||||||||| ||||||||||||    
T  7132045 cagaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaat 7131983  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 19632846 - 19632785
Alignment:
Q  16 cagaattatccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaa 77  Q
    |||||||||| ||| |||| || ||||| || |||||||| |||||||||||||||||||||    
T  19632846 cagaattatcattgttttcgctcgttagtaattgtccttcacttagtgagatcaaaatggaa 19632785  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 7993853 - 7993919
Alignment:
Q  16 cagaattatccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaatgcac 82  Q
    |||||| | ||||| ||||||| |||||||||||||| || ||| |||| |||||||||||| ||||    
T  7993853 cagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcac 7993919  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 10579425 - 10579487
Alignment:
Q  15 tcagaattatccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaa 77  Q
    ||||||| | ||||| |||| || || ||||| |||||||| |||||||||||||||||||||    
T  10579425 tcagaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 17627736 - 17627801
Alignment:
Q  25 ccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaatgcacgtctattg 90  Q
    ||||| ||||||| ||||| || |||||||| |||| |||||| |||||||||||||| |||||||    
T  17627736 ccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaatgcacatctattg 17627801  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 514401 - 514454
Alignment:
Q  21 ttatccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatg 74  Q
    ||||||||| || |||||||||  ||||||||||| ||||||||||||||||||    
T  514401 ttatccttgtttgcacttgttaagaactgtccttcacttagtgagatcaaaatg 514454  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 10169814 - 10169868
Alignment:
Q  23 atccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaa 77  Q
    ||||||| || |||| ||||| || |||||||| |||||||||||||||||||||    
T  10169814 atccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10169868  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 10177339 - 10177393
Alignment:
Q  23 atccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaa 77  Q
    ||||||| || |||| ||||| || |||||||| |||||||||||||||||||||    
T  10177339 atccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10177393  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 15091831 - 15091889
Alignment:
Q  25 ccttgctttcacttgttagaaactgtccttctcttagtgagatcaaaatggaatgcacg 83  Q
    ||||| ||||||| | ||||||||||||||| |||| ||| ||||||||| ||||||||    
T  15091831 ccttgttttcactcggtagaaactgtccttcgcttattgaaatcaaaatgaaatgcacg 15091889  T

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