View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_13 (Length: 375)
Name: NF4178_low_13
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Original strand, 22837144 - 22837498
Alignment:
| Q |
6 |
gatggacatcatctccatggacacattccaaatataaacctgtcttacctccaagactttaatgtctctggtaacaacctctctggtagagtacctgaat |
105 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22837144 |
gatggaaatcaaatccatggacacattccaaatataaacctgtcttacctccaagacttcaatgtctctggtaacaacctctctggtagagtacctgaat |
22837243 |
T |
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| Q |
106 |
tactttcgggttttcctgattcatcttttgctcaaaacccgtctttatgtggtgctccattgcaaaaatgtaaagacgttcctgcccttgcttcgtcgtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22837244 |
tactttcgggttttcctgattcatcttttgctcaaaacccgtctttatgtggtgctccattgcaaaaatgtaaagacgttcctgcccttgcttcatcgtt |
22837343 |
T |
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| Q |
206 |
ggttccatcttcttcgagtataatgtcgagaaacaagactaatagaaatggtggtccaagaatggggactttggtgttaatcgccattatcctcggcgat |
305 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22837344 |
ggttccatcttcttcaagtataatgtcgagaaacaagactcatagaaatggtggtccaagaatggggactttggttttaatcgccattatcctcggcgat |
22837443 |
T |
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| Q |
306 |
gtattagtactcgcagttgtctcattgcttctctactgctacttctggagaaacc |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22837444 |
gtattagtactcgcagttgtctcattgcttctctactgctacttctggagaaacc |
22837498 |
T |
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