View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4178_low_14 (Length: 371)

Name: NF4178_low_14
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4178_low_14
NF4178_low_14
[»] chr2 (4 HSPs)
chr2 (16-363)||(32206013-32206361)
chr2 (319-363)||(32174767-32174811)
chr2 (316-362)||(32211741-32211787)
chr2 (318-362)||(32534304-32534348)
[»] chr7 (4 HSPs)
chr7 (16-103)||(37008936-37009023)
chr7 (16-103)||(37013596-37013683)
chr7 (16-104)||(19610094-19610182)
chr7 (16-103)||(19605413-19605500)
[»] chr5 (3 HSPs)
chr5 (15-104)||(16729016-16729105)
chr5 (16-103)||(36982764-36982851)
chr5 (16-103)||(36984152-36984239)
[»] chr8 (1 HSPs)
chr8 (16-103)||(21554211-21554298)
[»] chr3 (1 HSPs)
chr3 (15-102)||(8450288-8450374)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 32206361 - 32206013
Alignment:
Q  16 tcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaatatcgtggagcatg 115  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32206361 tcaacaacatcaataattaatgtgcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatgcctctaatatcgtggagcatg 32206262  T
Q  116 agttacatcacatcttacaaatttgactaatctttgtcagctaaatattacgccctcgtgcagaatgagttgcatccgtagcaattcgacc-aannnnnn 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||          
T  32206261 agttacatcacatcttacaaatttgactaatctttgtcagctaaatattacgccctcgtgcagaatgagttgcatccttagcaattcgaccaaatttttt 32206162  T
Q  215 nngctaattatgactacaatccattatataaatctatacttggttcatgtcatatgcatcaaaatctaaaagatgaatgatagatatattttgaagagat 314  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32206161 ttgctaattatgactacaatccattatataaatctatacttggttcatgtcatatgcatcaaaatctaaaagatgaatgatagatatattttgaagagat 32206062  T
Q  315 gtacataccttattgtatccattatcaaccacgtctttatcttcatctc 363  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32206061 atacataccttattgtatccattatcaaccacgtctttatcttcttctc 32206013  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 32174767 - 32174811
Alignment:
Q  319 ataccttattgtatccattatcaaccacgtctttatcttcatctc 363  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  32174767 ataccttattgtatccattatcaaccacgtctttatcttcttctc 32174811  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 32211787 - 32211741
Alignment:
Q  316 tacataccttattgtatccattatcaaccacgtctttatcttcatct 362  Q
    |||||||||||||||||||||||||||| || |||| || |||||||    
T  32211787 tacataccttattgtatccattatcaacaacttcttcattttcatct 32211741  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 32534304 - 32534348
Alignment:
Q  318 cataccttattgtatccattatcaaccacgtctttatcttcatct 362  Q
    |||||||||||||||||||||||||| || |||| || |||||||    
T  32534304 cataccttattgtatccattatcaacaacttcttcattttcatct 32534348  T

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Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 37009023 - 37008936
Alignment:
Q  16 tcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaata 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  37009023 tcaacaacatcaataataaatgggcaataataaattggctaaatacatagaaaggaaacaaataattctaatgtaaatgtctctaata 37008936  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 37013683 - 37013596
Alignment:
Q  16 tcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaata 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  37013683 tcaacaacatcaataataaatgggcaataataaattggctaaatacatagaaaggaaacaaataattctaatgtaaatgtctctaata 37013596  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 19610094 - 19610182
Alignment:
Q  16 tcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaatat 104  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  19610094 tcaacaacatcaataataaattggcaataataaattggctaaatacatagaaaggaaacaaataattctaatgtaaatgtctctaatat 19610182  T

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Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 19605413 - 19605500
Alignment:
Q  16 tcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaata 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  19605413 tcaacaacatcaataataaattggcaataataaattggctaaatacatagaaaggaaacaaataattctaatgtaaatgtctctaata 19605500  T

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Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 16729016 - 16729105
Alignment:
Q  15 atcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaatat 104  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  16729016 atcaacaacatcaataataaatggacaataataaattggctaaatacttagaaaggaaacaaattattctaatgtaaatgtctctaatat 16729105  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 36982764 - 36982851
Alignment:
Q  16 tcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaata 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  36982764 tcaacaacatcaataataaattggcaataataaattggctaaatacatagaaaggaaacaaataattctaatgtaaatgtctctaata 36982851  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 36984152 - 36984239
Alignment:
Q  16 tcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaata 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  36984152 tcaacaacatcaataataaattggcaataataaattggctaaatacatagaaaggaaacaaataattctaatgtaaatgtctctaata 36984239  T

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Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 21554211 - 21554298
Alignment:
Q  16 tcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaata 103  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||    
T  21554211 tcaacaacatcaataataaatggccaaaaataaattggctaaatatttagaaaggaaacaaataattccaatgtaaatgtctctaata 21554298  T

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Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 8450374 - 8450288
Alignment:
Q  15 atcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaaggaaacaaataattctaatgtaaatacctctaat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||  |||||||    
T  8450374 atcaacaacatcaataataaatgggcaataataaattggctaaatacttagaaagg-aacaaattattctaatctaaatgtctctaat 8450288  T

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