View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4178_low_15 (Length: 363)

Name: NF4178_low_15
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4178_low_15
NF4178_low_15
[»] chr2 (2 HSPs)
chr2 (11-345)||(41558228-41558562)
chr2 (14-122)||(13059817-13059925)
[»] chr8 (2 HSPs)
chr8 (143-345)||(19950603-19950799)
chr8 (224-327)||(4543436-4543538)
[»] chr5 (1 HSPs)
chr5 (194-343)||(41319130-41319280)
[»] chr1 (3 HSPs)
chr1 (194-345)||(23191132-23191283)
chr1 (292-331)||(37480714-37480753)
chr1 (14-92)||(36725360-36725438)
[»] chr4 (2 HSPs)
chr4 (12-115)||(39991268-39991371)
chr4 (14-92)||(55081066-55081144)
[»] chr7 (2 HSPs)
chr7 (251-335)||(36437013-36437096)
chr7 (247-345)||(37323436-37323534)
[»] chr3 (1 HSPs)
chr3 (194-254)||(29066978-29067038)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 41558562 - 41558228
Alignment:
Q  11 cacagataagttacaaattcaatggctatgatcattttaccattttaaaatcaatggctttatcttgtctcataaatgagcaattactggaagagttgac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||||||||||    
T  41558562 cacagataagttacaaattcaatggctatgatcattttaccattttgaaatcaatggctttatctcgtctcataaatgaccaattattggaagagttgac 41558463  T
Q  111 ttaggaatttttcgatttacaccttacactcaagtgctccaacaatctcacacttgaatttaaaaatgactagtggtttctaattctattaagattgcaa 210  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41558462 ttaggaatttttcgattcacaccttacactcaagtgctccaacaatctcacacttgaatttaaaaatgactagtggtttctaattctattaagattgcat 41558363  T
Q  211 aagcaaatgtgtattacgacttaaacctttgtgttctaagattgtccataagtagaggtgtcttacgaattgaacctttgaatagtgaataagattcaga 310  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41558362 aagcaaatgtgtattacgacttaaacctttgtcttctaagattgtccataagtagaggtgtcttacgaattgaacctttgaatagtgaataagattcaaa 41558263  T
Q  311 ttttactagagtgactcatagtcttaactctatct 345  Q
    |||||||||||||||||||||||||||||||||||    
T  41558262 ttttactagagtgactcatagtcttaactctatct 41558228  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 13059925 - 13059817
Alignment:
Q  14 agataagttacaaattcaatggctatgatcattttaccattttaaaatcaatggctttatcttgtctcataaatgagcaattactggaagagttgactta 113  Q
    |||||||||| |||||||||||||| ||| | || ||||||| ||||||||||  || | || || | |||||| | || | | ||| ||||||||||||    
T  13059925 agataagttataaattcaatggctaggattagttgaccatttaaaaatcaatgatttgaactcgtgtaataaataaacactcaatgggagagttgactta 13059826  T
Q  114 ggaattttt 122  Q
    |||||||||    
T  13059825 ggaattttt 13059817  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 345
Target Start/End: Original strand, 19950603 - 19950799
Alignment:
Q  143 agtgctccaacaatctcacacttgaatttaaaaatgact-agtggtttctaattctattaagattgcaaaagcaaatgtgtattacgacttaaacctttg 241  Q
    |||| |||||||||| | ||||||||||||||||||||| || ||||||||      ||||||||||| | ||||| |||| ||||||||| ||| ||||    
T  19950603 agtgttccaacaatcccccacttgaatttaaaaatgactcagaggtttcta------ttaagattgcata-gcaaaggtgtcttacgacttgaacatttg 19950695  T
Q  242 tgttctaagattgtccataagtagaggtgtcttacgaattgaacctttgaatagtgaataagattcagattttactagagtgactcatagtctt-aactc 340  Q
      |||||||||||| ||||||   |||||||||  || |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  19950696 ccttctaagattgtgcataagcgaaggtgtcttt-gacttgaacctttgcgtagtgaataagattcagattttactagagtgactcgtagtcttgaactc 19950794  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 4543538 - 4543436
Alignment:
Q  224 ttacgacttaaacctttgtgttctaagattgtccataagtagaggtgtcttacgaattgaacctttgaatagtgaataagattcagattttactagagtg 323  Q
    ||||||||| ||||||||| ||||||| |||| ||||||   |||||||| | || |||||||||||  || ||||||||||||||||||||||||||||    
T  4543538 ttacgacttgaacctttgtcttctaaggttgtgcataagcgaaggtgtct-atgacttgaacctttgcgtaatgaataagattcagattttactagagtg 4543440  T
Q  324 actc 327  Q
    ||||    
T  4543439 actc 4543436  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 343
Target Start/End: Complemental strand, 41319280 - 41319130
Alignment:
Q  194 ttctattaagattgcaaaagcaaatgtgtattacgacttaaacctttgtgttctaagattgtccataagtagaggtgtcttacgaattgaacctttgaat 293  Q
    ||||||||| |||  | ||||||| |||| ||||||||| ||||||||  |||||| ||||| |||||| |  ||||||||| || |||||||||||  |    
T  41319280 ttctattaatattttataagcaaaggtgttttacgacttgaacctttgccttctaaaattgttcataagcaagggtgtcttatgacttgaacctttgcgt 41319181  T
Q  294 agtgaataagattcagattttactagagtgactcatagtctt-aactctat 343  Q
    | ||||||||||||| |||||||||||||||||| ||||||| ||||||||    
T  41319180 actgaataagattcatattttactagagtgactcgtagtcttgaactctat 41319130  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 345
Target Start/End: Complemental strand, 23191283 - 23191132
Alignment:
Q  194 ttctattaagattgcaaaagcaaatgtgtattacgacttaaacctttgtgttctaagattgtccataagtagaggtgtcttacgaattgaacctttgaat 293  Q
    |||||||||||| ||| |||  || |||| | ||||||| ||||||||  ||||||| |||| ||||||   |||||||| | || |||||||||||  |    
T  23191283 ttctattaagatagcataagtcaaggtgtctaacgacttgaacctttgccttctaaggttgtgcataagcgaaggtgtct-atgacttgaacctttgcgt 23191185  T
Q  294 agtgaataagattcagattttactagagtgactcatagtctt-aactctatct 345  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  23191184 agtgaataagattcagattttactagaatgactcgtagtcttgaactctatct 23191132  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 37480753 - 37480714
Alignment:
Q  292 atagtgaataagattcagattttactagagtgactcatag 331  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  37480753 atagtgagtaagattcatattttactagagtgactcatag 37480714  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 36725360 - 36725438
Alignment:
Q  14 agataagttacaaattcaatggctatgatcattttaccattttaaaatcaatggctttatcttgtctcataaatgagca 92  Q
    ||||||||||||||| ||||||||| ||| | || ||| ||  |||||||||||||| |||| |  |||||||||||||    
T  36725360 agataagttacaaatccaatggctaggattaattgaccgttagaaaatcaatggcttgatctcgcatcataaatgagca 36725438  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 39991371 - 39991268
Alignment:
Q  12 acagataagttacaaattcaatggctatgatcattttaccattttaaaatcaatggctttatcttgtctcataaatgagcaattactggaagagttgact 111  Q
    |||||||||||||||||||||||||||||||||||| ||| ||  |||||||| |   | |||| |||||||||||||||| | | ||  ||||||||||    
T  39991371 acagataagttacaaattcaatggctatgatcatttgaccgttacaaaatcaacgatctgatctcgtctcataaatgagcactcagtgagagagttgact 39991272  T
Q  112 tagg 115  Q
    ||||    
T  39991271 tagg 39991268  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 55081144 - 55081066
Alignment:
Q  14 agataagttacaaattcaatggctatgatcattttaccattttaaaatcaatggctttatcttgtctcataaatgagca 92  Q
    ||||||||||||||| ||||||||| ||| |  | ||| ||  |||||||||||||||||||   ||||||||||||||    
T  55081144 agataagttacaaatccaatggctaggattaaatgaccgttagaaaatcaatggctttatctcacctcataaatgagca 55081066  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 36437096 - 36437013
Alignment:
Q  251 attgtccataagtagaggtgtcttacgaattgaacctttgaatagtgaataagattcagattttactagagtgactcatagtctt 335  Q
    ||||| |||||||||||||||||||||| ||  ||||||| || ||||||||||||||  |||||| ||||||||| ||| ||||    
T  36437096 attgtgcataagtagaggtgtcttacgacttagacctttgcat-gtgaataagattcaatttttacaagagtgacttatattctt 36437013  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 37323436 - 37323534
Alignment:
Q  247 taagattgtccataagtagaggtgtcttacgaattgaacctttgaatagtgaataagattcagattttactagagtgactcatagtctt-aactctatct 345  Q
    ||||||||| |||||||||| |||| || | | ||||||  ||| ||||||||||||||||||| |||| ||||||||||| || |||| ||||||||||    
T  37323436 taagattgtgcataagtagatgtgttttgcaacttgaacaattgtatagtgaataagattcaga-tttattagagtgactcgtaatcttaaactctatct 37323534  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 29067038 - 29066978
Alignment:
Q  194 ttctattaagattgcaaaagcaaatgtgtattacgacttaaacctttgtgttctaagattg 254  Q
    ||||||| |||||||| || |||| |||| || |||||| |||||||||||||||||||||    
T  29067038 ttctattcagattgcataaacaaaggtgtcttgcgacttgaacctttgtgttctaagattg 29066978  T

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