View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_16 (Length: 363)
Name: NF4178_low_16
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 33053395 - 33053056
Alignment:
| Q |
19 |
cccagagcgtcaagtttagtcctagtccaattgtccacttggtatctcataatt---gaagacctctttgaggtagttgtgtcaatggttttggatatag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33053395 |
cccagagcgtcaagtttagtcctagtccaattgtccacttggtatctcataattaatgaagacctctttgaggtagttgtgtcaatggttttggatatag |
33053296 |
T |
|
| Q |
116 |
ctgtataacctgaagatgaatcattctgaaaacaattaaatgagcttcctctagttagcaacatgatgaaagttatctatgaattctactacaacatttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
33053295 |
ttgtataacctgaagatgaatcattctgaaaacaattaaatgagcttcctctagttagcaacatgataaaagttatctatgaattccactacaacatttt |
33053196 |
T |
|
| Q |
216 |
ttacttacaaccacactttaaaaacatatcaaaatatgaagaaannnnnnnctatttaagatgatgatgttttttaaactatggtgacttaaggtattgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
33053195 |
ttacttacaaccacactttaaaaacatatcaaaataggaagaaatttttttctatttaagatgatgatattttttaaactgtggtgacttaaggtattgc |
33053096 |
T |
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| Q |
316 |
atattcaatcggcaatcattatgatataaggagtataatc |
355 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33053095 |
atattcaatcggcaatcattatgatataaggagtataatc |
33053056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 355
Target Start/End: Complemental strand, 42454316 - 42453979
Alignment:
| Q |
20 |
ccagagcgtcaagtttagtcctagtccaattgtccacttggtatctcataattgaagacctctttgaggtagttgtgtcaatggttttggatatagctgt |
119 |
Q |
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||||||||||||||| |||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
42454316 |
ccagagcgtcaagttcagtcttagtccaatcgtccacttgatatcttataattgaagacctctttgaggtagttgtgtcaatggttttggatctagttgt |
42454217 |
T |
|
| Q |
120 |
ataacctgaagatgaatcattctgaaaacaattaaatgagcttcctctagttagcaacatgatgaaagttatctatgaattctactacaacatt-tttta |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42454216 |
ataacctgaagatgaatcattctgaaaacaattaaataagcttcctctagttagcaacatgatgaaagttatctatgaattctactacaacattttttta |
42454117 |
T |
|
| Q |
219 |
cttacaaccacactttaaaaacatatcaaaatatgaaga-aannnnnnnctatttaagatgatgatgttttttaaactatggtgacttaaggtattgcat |
317 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
42454116 |
cttacaaccacactataaaaacatatcaaaatatgaagattttttttttctatttaagatgatgatgctttttaaactatggtgacttaaggtattacat |
42454017 |
T |
|
| Q |
318 |
attcaatcggcaatcattatgatataaggagtataatc |
355 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||| |
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| T |
42454016 |
attcaatccacaatgattatgatataaggagtataatc |
42453979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 24114922 - 24115258
Alignment:
| Q |
19 |
cccagagcgtcaagtttagtcctagtccaattgtccacttggtatctcataattgaagacctctttgaggtagttgtgtcaatggttttggatatagctg |
118 |
Q |
| |
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||||||| |||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
24114922 |
cccagagtgtcaggttcagtcttagtccaatcgtccacttggtatctcataattgaagacctctttgaggtagttgtgtcaatggttttggatctagttg |
24115021 |
T |
|
| Q |
119 |
tataacctgaagatgaatcattctgaaaacaattaaatgagcttcctctagttagcaacatgatgaaagttatctatgaattctactacaacatttttta |
218 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
24115022 |
tataacctaaagatgaatcattctgaaaataattaaatgagcttcctctagttagcgacattatgaaagttatctatgaattctactacaaca-ttttta |
24115120 |
T |
|
| Q |
219 |
cttacaaccacactttaaaaacatatcaaaatatgaag-aaannnnnnnctatttaagatgatgatgttttttaaactatggtgacttaaggtattgcat |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
24115121 |
cttacgaccacactttaaaaacatatcaaaatatgaagaaaaaaatgttctatttaaaatgatgatgttttttaaactatggtgactaaaggtattgcat |
24115220 |
T |
|
| Q |
318 |
attcaatcggcaatcattatgatataaggagtataatc |
355 |
Q |
| |
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||| |||| |||| ||||||||||||||||||||||| |
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| T |
24115221 |
atttaatctacaatgattatgatataaggagtataatc |
24115258 |
T |
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