View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_19 (Length: 301)
Name: NF4178_low_19
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 27542066 - 27542364
Alignment:
| Q |
5 |
atgaagaataaactgtcatgagcaaacagggcttcactcattcaagagaatatgcaatttccaagttgtttttcgtgttcttctcaagtacttgtcctgc |
104 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27542066 |
atgaagaataaactgtcatgagtaaacagggcttcactcattcaagagaatatgcaatttccaagttgtttttcgtgttcttctcaagtacttgtcctgc |
27542165 |
T |
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| Q |
105 |
aaattattat-----------------tttgactactgataatagaattgaagataagtaaagaccacaatttgtgacaatgtttcccaacattttgagt |
187 |
Q |
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|| ||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27542166 |
aagttattttgactaagaaagctaccatatagctactgataatagaattgaagataagtaaagaccacaatttgtgacaatgtttcccaacatttttagt |
27542265 |
T |
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| Q |
188 |
caagaaagagtttctgaacatttaggctaatcatctaaaaagatgtcgtcaaaaacgttgctatgaatgcataacaattagcctagatgcagagaaatt |
286 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27542266 |
caaaaaagagtttctgaacatttaggctaatcatctaaaaagatgtcgtcaaaaacgttgctatgaatgcataacaattagcctagatgcagagaaatt |
27542364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 286
Target Start/End: Original strand, 23268024 - 23268143
Alignment:
| Q |
166 |
aatgtttcccaacattttgagtcaagaaagagtttctgaacatttaggctaatcatctaaaaagatgtcgtcaaaa-acgttgctatgaatgcataacaa |
264 |
Q |
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||||||||||| ||||||||||||| |||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23268024 |
aatgtttccca-cattttgagtcaaaaaagagtttcccaacatttaggttaatcatg-aaaaagatgtcgtcaaaaaacgttgctatgaatgcataacaa |
23268121 |
T |
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| Q |
265 |
ttagcctagatgcagagaaatt |
286 |
Q |
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| T |
23268122 |
ttagcctagatgcagagaaatt |
23268143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 23257579 - 23257691
Alignment:
| Q |
170 |
tttcccaacattttgagtcaagaaagagtttctgaacatttaggctaatcatctaaaaagatgtcgtcaaaaacgttgctatgaatgcataacaattagc |
269 |
Q |
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||||||||||||||||||||| |||||||| | |||||||||||||| | ||||||| | |||||| || |||| ||| ||||| ||||||||| |
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| T |
23257579 |
tttcccaacattttgagtcaa---agagtttcccagcatttaggctaatcttg-aaaaagacattgtcaaacacattgccatggatgcaccacaattagc |
23257674 |
T |
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| Q |
270 |
ctagatgcagagaaatt |
286 |
Q |
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||| ||||||||||||| |
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| T |
23257675 |
ctaaatgcagagaaatt |
23257691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 23275457 - 23275569
Alignment:
| Q |
170 |
tttcccaacattttgagtcaagaaagagtttctgaacatttaggctaatcatctaaaaagatgtcgtcaaaaacgttgctatgaatgcataacaattagc |
269 |
Q |
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||||||||||||||||||||| |||||||| | |||||||||||||| | ||||||| | |||||| || |||| ||| ||||| ||||||||| |
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| T |
23275457 |
tttcccaacattttgagtcaa---agagtttcccagcatttaggctaatcttg-aaaaagacattgtcaaacacattgccatggatgcaccacaattagc |
23275552 |
T |
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| Q |
270 |
ctagatgcagagaaatt |
286 |
Q |
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||| ||||||||||||| |
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| T |
23275553 |
ctaaatgcagagaaatt |
23275569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 8984324 - 8984363
Alignment:
| Q |
247 |
gctatgaatgcataacaattagcctagatgcagagaaatt |
286 |
Q |
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||||||||||||| || ||||||||||||||||||||||| |
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| T |
8984324 |
gctatgaatgcatcacgattagcctagatgcagagaaatt |
8984363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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