View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4178_low_2 (Length: 666)

Name: NF4178_low_2
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4178_low_2
NF4178_low_2
[»] chr1 (3 HSPs)
chr1 (187-649)||(8151684-8152146)
chr1 (11-186)||(27242634-27242810)
chr1 (341-446)||(52240764-52240869)
[»] chr7 (3 HSPs)
chr7 (11-186)||(9356605-9356785)
chr7 (329-441)||(22382381-22382493)
chr7 (25-68)||(46071212-46071255)
[»] chr3 (5 HSPs)
chr3 (11-187)||(44052688-44052869)
chr3 (11-186)||(54536887-54537068)
chr3 (11-186)||(44351994-44352174)
chr3 (11-82)||(18321970-18322044)
chr3 (155-186)||(18321814-18321845)
[»] chr8 (5 HSPs)
chr8 (11-186)||(9600066-9600246)
chr8 (72-186)||(28395622-28395734)
chr8 (11-97)||(28395532-28395620)
chr8 (329-561)||(13795001-13795228)
chr8 (410-470)||(14526756-14526816)
[»] chr2 (2 HSPs)
chr2 (11-186)||(1288557-1288733)
chr2 (11-186)||(1198165-1198338)
[»] chr6 (3 HSPs)
chr6 (329-466)||(10329135-10329272)
chr6 (351-560)||(3226843-3227059)
chr6 (342-448)||(6876626-6876732)
[»] chr4 (6 HSPs)
chr4 (360-448)||(45002213-45002300)
chr4 (110-186)||(17626794-17626868)
chr4 (14-80)||(17626671-17626740)
chr4 (25-68)||(20618524-20618567)
chr4 (377-447)||(16649022-16649092)
chr4 (399-447)||(55741612-55741660)
[»] scaffold0034 (1 HSPs)
scaffold0034 (468-563)||(102668-102762)
[»] chr5 (1 HSPs)
chr5 (361-448)||(26897302-26897388)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 187 - 649
Target Start/End: Complemental strand, 8152146 - 8151684
Alignment:
Q  187 tctactactaataccactacttaaatttttggtatcacgtcaagtgtgtgagaatcatgattagcatagtttttaaaagttacattatgtaatttttata 286  Q
    |||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152146 tctactactagtactactacttaaatttttggtatgacgttaagtgtgtgagaatcatgattagcatagtttttaaaagttacattatgtaatttttata 8152047  T
Q  287 acattatggtagggtggaagtgcagtaagtcactttcgacgaaaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcat 386  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152046 acattatggtagggtggaagtgctgtaagtcactttcgacgaaaaa-taatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcat 8151948  T
Q  387 cataaagttttgcgtctaccgtctttgcttcatgacaaagttatataatttattttttgtgtagtgtttattcatttgtatataaatttgtttattgcga 486  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8151947 cataaagtttcgcgtctaccgtctttgcttcatgacaaagttatataattcattttttgtgtagtgtttattcatttgtatataaatttgtttattgcga 8151848  T
Q  487 ggcatttattctaagtccaatattcgaggcctaaagtgaaggtttggggtcgcc-ttaccctaaggccagccctgaccctatataggctaataaatcttg 585  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  8151847 ggcatttattctaagtccaatattcaaggcctaaagtgagggtttggggtcgcctttacctttaggccagccctgaccctatataggctaataaatcttg 8151748  T
Q  586 ttgagggaaacaaaactctaaagactctcttaatgaaaagaatttttccttgacacaatgggag 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8151747 ttgagggaaacaaaactctaaagactctcttaatgaaaagaatttttccttgacacaatgggag 8151684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 27242634 - 27242810
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagta 108  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  27242634 gtgagaagaatggtgttttgatatgtgaggatggagaggagagggggtaccgagagagagcagacaaaaataatcaggggaattcaagggtactatagta 27242733  T
Q  109 attttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 186  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27242734 attttcagtatacaaattt-tttttttttattggggggtgccacagcacctgggggtctcaatagagatccgcccctg 27242810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 341 - 446
Target Start/End: Original strand, 52240764 - 52240869
Alignment:
Q  341 aattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctttgcttcatgacaaagttatataatttatt 440  Q
    |||||||||| |||||   |||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||  ||||||||||    
T  52240764 aattgtaaagctgtatcaggaagtgttgaacccatgttgtaagcatcataaagtctcgcgtctaccatctttgcttcatgataaagttgcataatttatt 52240863  T
Q  441 ttttgt 446  Q
    | ||||    
T  52240864 tattgt 52240869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 9356605 - 9356785
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagta 108  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  9356605 gtgagaagaatggtgttttgatatgtgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagggtactatagta 9356704  T
Q  109 attttcagtatacaaatt---tatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 186  Q
    ||||||||||||||||||   | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  9356705 attttcagtatacaaattttatttttatttttattggggggtgccacagcacctgggggtctcaatagagatccgcccctg 9356785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 329 - 441
Target Start/End: Complemental strand, 22382493 - 22382381
Alignment:
Q  329 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctttgcttcatgacaaagtt 428  Q
    ||||||| |||  ||||||||| ||| ||  |||||||||||||||| |||||||||||||||||  | ||||||||| |||||| ||||||||||||||    
T  22382493 aaaaatagtgtacattgtaaagctgtgtgaggaagtgttgaactcatattgtaagcatcataaagcatcgcgtctaccatctttgtttcatgacaaagtt 22382394  T
Q  429 atataatttattt 441  Q
     ||||||| ||||    
T  22382393 gtataattcattt 22382381  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 46071255 - 46071212
Alignment:
Q  25 gttttgatatgtgaggatggagagaagagagggtaccgagagag 68  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||    
T  46071255 gttttgatatgtgaggagggagaggagagggggtaccgagagag 46071212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 8e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 44052688 - 44052869
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagta 108  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  44052688 gtgagaagaatggtgttttgatatgtgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagggtactatagta 44052787  T
Q  109 attttcagtatacaaa---tttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctgt 187  Q
    ||||||||||||||||   ||| ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  44052788 attttcagtatacaaattttttttttttttttattggggggtgccacagcacctgggggtctcaatagagatccgcccctgt 44052869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 54536887 - 54537068
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagta 108  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  54536887 gtgagaagaatggtgttttgatatgtgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcagggaaattcaagggtactatagta 54536986  T
Q  109 attttcagtatacaaa--tttatttatttttagtggggggtgccaca--acacctgggggtctcaatagagatccgcccctg 186  Q
    ||||||||||||||||  ||||||| |||||| ||||||||||||||  || ||||||||||||||||||||||||||||||    
T  54536987 attttcagtatacaaatttttatttttttttattggggggtgccacagcacccctgggggtctcaatagagatccgcccctg 54537068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 44352174 - 44351994
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgagagag--cagacaaaaacaatcaggggaattcaagggtactatagta 108  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  44352174 gtgagaagaatggtgttttgatatgtgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagggtactatggta 44352075  T
Q  109 attttcagtatacaaa--tttatttatttttagt-ggggggtgccacaacacctgggggtctcaatagagatccgcccctg 186  Q
    ||||||||||||||||  ||| ||| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  44352074 attttcagtatacaaatttttttttttttttattgggggggtgccacagcacctgggggtctcaatagagatccgcccctg 44351994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 18322044 - 18321970
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgagaga---gcagacaaaaacaat 82  Q
    |||||||||||   |||||||||||||||||||||||| |||| |||||||| ||||   |||||||||||||||    
T  18322044 gtgagaagaatcacgttttgatatgtgaggatggagaggagagggggtaccgcgagagaggcagacaaaaacaat 18321970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 186
Target Start/End: Complemental strand, 18321845 - 18321814
Alignment:
Q  155 cacctgggggtctcaatagagatccgcccctg 186  Q
    ||||||||||||||||||||||||||||||||    
T  18321845 cacctgggggtctcaatagagatccgcccctg 18321814  T

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Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 9600066 - 9600246
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagta 108  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  9600066 gtgagaagaatggtgttttgatatgtgatgatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagggtactatagta 9600165  T
Q  109 attttcagtatacaaa-tttattt--atttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 186  Q
    |||||||||||||||| |||||||   |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  9600166 attttcagtatacaaattttattttattttttattggggggtgccacaacacctgagggtctcaatagagatccgcccctg 9600246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 28395622 - 28395734
Alignment:
Q  72 acaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||||||||    
T  28395622 acaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatt--tttttttttattggggggtgccacagcacctgggggtctcaat 28395719  T
Q  172 agagatccgcccctg 186  Q
    |||||||||||||||    
T  28395720 agagatccgcccctg 28395734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 28395532 - 28395620
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtacc--gagagagcagacaaaaacaatcaggggaattcaagg 97  Q
    |||||||||||||||||||||||| ||||||||||||| |||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  28395532 gtgagaagaatggtgttttgatatatgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagg 28395620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 329 - 561
Target Start/End: Complemental strand, 13795228 - 13795001
Alignment:
Q  329 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctttgcttcatgacaaagtt 428  Q
    ||||||| || | ||||||||| ||||| | |||||||||||||||||||||||| |||||||||  | ||||||||| |||||| |||||||  |||||    
T  13795228 aaaaatagtgcgcattgtaaagatgtatagggaagtgttgaactcatgttgtaagtatcataaagcctcgcgtctaccatctttgtttcatga-taagtt 13795130  T
Q  429 atataatttattttttgtgtagtgtttattcatttgtatataaatttgtttattgcgaggcatttattctaagtccaatattc-gaggcctaaagtgaag 527  Q
     ||||||| |||| ||||||    ||||  ||     | | |||||||| |||||  |||| |||||||||||||||| |||| ||||||||||| || |    
T  13795129 gtataattcatttgttgtgtgacctttacaca----cacacaaatttgtctattgttaggcctttattctaagtccaaaattcagaggcctaaagcgagg 13795034  T
Q  528 gtttggggtcgccttaccctaaggccagccctga 561  Q
    | || ||||||||||||||| |||||||||||||    
T  13795033 gctt-gggtcgccttacccttaggccagccctga 13795001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 14526816 - 14526756
Alignment:
Q  410 tttgcttcatgacaaagttatataatttattttttgtgtagtgtttattcatttgtatata 470  Q
    ||||||||||||| ||||| ||||||| |||| |||||| || ||||||| ||| ||||||    
T  14526816 tttgcttcatgaccaagttgtataattcatttgttgtgtggtctttattcgtttatatata 14526756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 1288557 - 1288733
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgagagag---cagacaaaaacaatcaggggaattcaaggg-tactatag 106  Q
    ||||||||||||  ||||||||||| |||||||||||| |||| | ||||||||||||   |||||||||||||    | |||| || ||| ||||||||    
T  1288557 gtgagaagaatgc-gttttgatatgcgaggatggagaggagagggagtaccgagagagagacagacaaaaacaagt--gtgaatccagggggtactatag 1288653  T
Q  107 taattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 186  Q
    || |||||||||||||||||  | | |||||| | |||||||||||  ||||||||||||||||||||||||||||||||    
T  1288654 tagttttcagtatacaaattattatttttttactagggggtgccacggcacctgggggtctcaatagagatccgcccctg 1288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 1198165 - 1198338
Alignment:
Q  11 gtgagaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgagagag---cagacaaaaacaatcaggggaattcaagggtactatagt 107  Q
    ||||||||||||  |||||||||||||||||||| ||| |||| ||||||||||||||   |||||||||||||    | |||| || |||||| |||||    
T  1198165 gtgagaagaatgc-gttttgatatgtgaggatggggaggagagggggtaccgagagagagacagacaaaaacaa--gtgtgaatccaggggtacgatagt 1198261  T
Q  108 aattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 186  Q
    | ||||||| |||||||||  ||| |||||| |  ||| ||||||  |||||||||||||||||||||||||| |||||    
T  1198262 agttttcagcatacaaatt--tttttttttactaagggatgccacggcacctgggggtctcaatagagatccgtccctg 1198338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 329 - 466
Target Start/End: Original strand, 10329135 - 10329272
Alignment:
Q  329 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctttgcttcatgacaaagtt 428  Q
    ||||||| || | ||||||||| ||| ||| |||||||| ||| |||||||||||||||||||||  | || |||||| |||||||||||||||||| ||    
T  10329135 aaaaatagtgcgcattgtaaagatgtgtggggaagtgttaaacccatgttgtaagcatcataaagcatcgcatctaccatctttgcttcatgacaaaatt 10329234  T
Q  429 atataatttattttttgtgtagtgtttattcatttgta 466  Q
     ||||||| |||| |||||| |  ||||||||||||||    
T  10329235 gtataattcatttgttgtgtggcctttattcatttgta 10329272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 560
Target Start/End: Original strand, 3226843 - 3227059
Alignment:
Q  351 ttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctttgcttcatgacaaagttatataatttattttttgtgtag 450  Q
    ||||||||| || |||||||| |||| |||||||| |||||||| | | ||||||| ||||||||||||||||||||| ||||||| |||| || |||      
T  3226843 ttgtatggaaaaatgttgaacccatgctgtaagcaccataaagtctcgagtctaccatctttgcttcatgacaaagttgtataattcatttgttatgtga 3226942  T
Q  451 tgtttattcatttgtatat--------aaatttgtttattgcgaggcatttattctaagtccaatattcgaggcctaaagtgaaggtttggggtcgcctt 542  Q
      ||||||| |||||||||        |||||||| |||||  |||| |||||||||| |||||  ||  |||||||||  || ||||| | ||||||||    
T  3226943 cctttattcttttgtatatatatacacaaatttgtctattgtaaggcctttattctaactccaaatttgaaggcctaaaacgagggttt-gagtcgcctt 3227041  T
Q  543 accctaaggccagccctg 560  Q
    ||||| ||||||||||||    
T  3227042 acccttaggccagccctg 3227059  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 342 - 448
Target Start/End: Original strand, 6876626 - 6876732
Alignment:
Q  342 attgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctttg-cttcatgacaaagttatataatttatt 440  Q
    ||||| ||||||||||| || || |||||||||||||||||||||||||||   | ||||||||||||||||  |||||||||||||| |||||| ||||    
T  6876626 attgtcaagttgtatgggga-gtcttgaactcatgttgtaagcatcataaaacctcgcgtctaccgtctttgtgttcatgacaaagttgtataatctatt 6876724  T
Q  441 ttttgtgt 448  Q
    | ||||||    
T  6876725 tgttgtgt 6876732  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 360 - 448
Target Start/End: Complemental strand, 45002300 - 45002213
Alignment:
Q  360 gaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctttgcttcatgacaaagttatataatttattttttgtgt 448  Q
    ||||||||||||  |||||||||||||||||||| || ||||||||| ||||||||||| ||| ||||| ||||||| |||| ||||||    
T  45002300 gaagtgttgaacctatgttgtaagcatcataaag-ttcgcgtctaccatctttgcttcacgaccaagttgtataattcatttgttgtgt 45002213  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 17626794 - 17626868
Alignment:
Q  110 ttttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 186  Q
    |||||||||| ||||||| |||  ||||| | |||||||||||   |||||||||||||||||||||||||||||||    
T  17626794 ttttcagtattcaaattttttt--ttttattagggggtgccacggaacctgggggtctcaatagagatccgcccctg 17626868  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 17626671 - 17626740
Alignment:
Q  14 agaagaatggtgttttgatatgtgaggatggagagaagagagggtaccgagagag---cagacaaaaaca 80  Q
    |||||||| | |||||||||||||||||||||||| | || ||||||||||||||   ||||||||||||    
T  17626671 agaagaatcgcgttttgatatgtgaggatggagaggaaagggggtaccgagagagagacagacaaaaaca 17626740  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 20618524 - 20618567
Alignment:
Q  25 gttttgatatgtgaggatggagagaagagagggtaccgagagag 68  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||    
T  20618524 gttttgatatgtgaggagggagaggagagggggtaccgagagag 20618567  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 16649092 - 16649022
Alignment:
Q  377 ttgtaagcatcataaagttttgcgtctaccgtctttgcttcatgacaaagttatataatttattttttgtg 447  Q
    |||||||||||||||||  | ||||||| | ||||| ||||||||||||||| | ||||| |||| |||||    
T  16649092 ttgtaagcatcataaagcctcgcgtctaacatctttacttcatgacaaagttgtgtaattcatttattgtg 16649022  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 55741660 - 55741612
Alignment:
Q  399 cgtctaccgtctttgcttcatgacaaagttatataatttattttttgtg 447  Q
    |||||||| |||||||||||| |||||||| ||||||| |||| |||||    
T  55741660 cgtctaccatctttgcttcataacaaagttgtataattcatttgttgtg 55741612  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 102762 - 102668
Alignment:
Q  468 ataaatttgtttattgcgaggcatttattctaagtccaatattcgaggcctaaagtgaaggtttggggtcgccttaccctaaggccagccctgacc 563  Q
    |||||||||| ||||| ||||| |||||||||||||||| |||||  ||||||||  ||||  | |||| |||||||||| |||||||||||||||    
T  102762 ataaatttgtctattgtgaggcctttattctaagtccaaaattcggagcctaaag-caagggcttgggttgccttacccttaggccagccctgacc 102668  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 448
Target Start/End: Original strand, 26897302 - 26897388
Alignment:
Q  361 aagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctttgcttcatgacaaagttatataatttattttttgtgt 448  Q
    |||||||||||  || |||||||||||||| ||||| ||||||||| ||||  ||||| ||| ||||| ||||||| |||| ||||||    
T  26897302 aagtgttgaacctatattgtaagcatcatatagttt-gcgtctaccatcttcacttcacgaccaagttgtataattcatttgttgtgt 26897388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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