View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_20 (Length: 283)
Name: NF4178_low_20
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 30690075 - 30689812
Alignment:
| Q |
13 |
cagatatggaaatgctgcaaggcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgag |
112 |
Q |
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| T |
30690075 |
cagatatggaaatgcagcaaggcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgag |
30689976 |
T |
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| Q |
113 |
ttcgcagacaccaattaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataatactaagatggat |
212 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30689975 |
ttcgcagacaccaattaccaaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaacgaagtgttgcagaataatactaagatggat |
30689876 |
T |
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| Q |
213 |
caaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagag |
276 |
Q |
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| T |
30689875 |
caaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagag |
30689812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 30672180 - 30671925
Alignment:
| Q |
13 |
cagatatggaaatgctgcaaggcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgag |
112 |
Q |
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| T |
30672180 |
cagatatggaaatgctgcaaagcccttctgaaatttcctttgaatcatttggtattaatcatgattttctttcctttgatatggttgatttctcatcgag |
30672081 |
T |
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| Q |
113 |
ttcgcagacaccaattaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataatactaagatggat |
212 |
Q |
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| T |
30672080 |
ttcgcagacaccagttaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataataataagatgaat |
30671981 |
T |
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| Q |
213 |
caaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcaga |
268 |
Q |
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| T |
30671980 |
caaaagtcatcattaataggtgtaagaaaaagaccttgggggaaatatgctgcaga |
30671925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 30710835 - 30710581
Alignment:
| Q |
13 |
cagatatggaaatgctgcaag---gcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatc |
109 |
Q |
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|||||||||||||||||||| ||||||| |||||| |||| |||| ||| | |||| ||||||| |||| ||||||||||||||||||||||||| |
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| T |
30710835 |
cagatatggaaatgctgcaacaaagcccttcggaaattcccttcgaatcattaggtatt---catgattgtcttacctttgatatggttgatttctcatc |
30710739 |
T |
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| Q |
110 |
gagttcgcagacaccaattaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataatactaagatg |
209 |
Q |
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| T |
30710738 |
gagtttgcagacaataattaacgaaaacgagccaaaacaatcaatgttgaagt------catctgaagctaaacaagtaatgcagaacatttataagatt |
30710645 |
T |
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| Q |
210 |
gatcaaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagag |
276 |
Q |
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|||||||| |||||||||||||| || ||||||| ||||||||| ||||| ||||| ||||||| |
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| T |
30710644 |
gatcaaaa---gtcatatataggtgttaggaaaagacgttggggaaaatatgctgcagaaatcagag |
30710581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 56539091 - 56539145
Alignment:
| Q |
222 |
tcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagag |
276 |
Q |
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|||||||||||||| |||||||| | ||||||||| ||||||||||||||||||| |
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| T |
56539091 |
tcatatataggtgtgagaaaaagtctttggggaaaatatgcagcagagatcagag |
56539145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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