View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_21 (Length: 266)
Name: NF4178_low_21
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 24117294 - 24117389
Alignment:
| Q |
158 |
tgtgtatgatcgtagggtttttctttccgaaagaatttctattgtaagctctcttct--tatatattaaagttttacataattttactgttttaac |
251 |
Q |
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| T |
24117294 |
tgtgtatgatcgtagggtttttctttctgaaagaatttctatcgtaagctatcttcttatatatattaaagttttgcataattttactgttttaac |
24117389 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 24117151 - 24117227
Alignment:
| Q |
10 |
catcatcataatcagtaaacnnnnnnncattgcagatgagtttttcagaatcatgtaaaccaagcatgttcatagtt |
86 |
Q |
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| T |
24117151 |
catcatcataatcagtaaactttttttccttggagatgagtttttcagaatcatgtaaaccaagcatgttcatagtt |
24117227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 24614223 - 24614147
Alignment:
| Q |
10 |
catcatcataatcagtaaacnnnnnnncattgcagatgagtttttcagaatcatgtaaaccaagcatgttcatagtt |
86 |
Q |
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| T |
24614223 |
catcatcataatccgtaaactttttttcattgcagatgagtttttcataatcatgtaaaccaagcatgttcatagtt |
24614147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 24614075 - 24614025
Alignment:
| Q |
158 |
tgtgtatgatcgtagggttttt-ctttccgaaagaatttctattgtaagct |
207 |
Q |
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| T |
24614075 |
tgtgtatgatcgtagggttttttctttctgaaagaatttctatcgtaagct |
24614025 |
T |
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