View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4178_low_24 (Length: 234)

Name: NF4178_low_24
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4178_low_24
NF4178_low_24
[»] chr3 (7 HSPs)
chr3 (21-215)||(24923448-24923642)
chr3 (21-215)||(25085038-25085232)
chr3 (24-215)||(24919877-24920068)
chr3 (1-215)||(24982046-24982260)
chr3 (24-215)||(24497250-24497441)
chr3 (24-215)||(31825548-31825739)
chr3 (21-215)||(21584585-21584779)
[»] chr8 (1 HSPs)
chr8 (21-215)||(14261020-14261214)
[»] chr7 (4 HSPs)
chr7 (18-215)||(10575387-10575584)
chr7 (26-212)||(39954838-39955024)
chr7 (69-215)||(354404-354551)
chr7 (69-215)||(10580787-10580928)
[»] chr2 (2 HSPs)
chr2 (49-215)||(41027572-41027738)
chr2 (34-132)||(30012096-30012194)
[»] chr4 (3 HSPs)
chr4 (43-215)||(22898553-22898725)
chr4 (43-215)||(22950221-22950393)
chr4 (26-212)||(53328717-53328903)
[»] chr5 (1 HSPs)
chr5 (34-197)||(26358549-26358712)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 24923448 - 24923642
Alignment:
Q  21 tcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtat 120  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| || || || ||||||||||||||||| |||||||||    
T  24923448 tcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtat 24923547  T
Q  121 gtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  24923548 gtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctct 24923642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 25085232 - 25085038
Alignment:
Q  21 tcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtat 120  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||    
T  25085232 tcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtat 25085133  T
Q  121 gtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  25085132 gtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctct 25085038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 24919877 - 24920068
Alignment:
Q  24 tcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtc 123  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||||||||| ||||| ||||||||||||    
T  24919877 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtc 24919976  T
Q  124 acagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24919977 acagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 24920068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 24982260 - 24982046
Alignment:
Q  1 cagaatagagtgtttattcatcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcc 100  Q
    ||||||| ||||||  ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||    
T  24982260 cagaatatagtgttacttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcc 24982161  T
Q  101 tccttgcgtgttcagtgtatgtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattct 200  Q
    |||| ||||| ||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24982160 tcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattct 24982061  T
Q  201 cttcacaccacctct 215  Q
    ||| |||||||||||    
T  24982060 cttaacaccacctct 24982046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 24497250 - 24497441
Alignment:
Q  24 tcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtc 123  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||||     
T  24497250 tcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgta 24497349  T
Q  124 acagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  24497350 actgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctct 24497441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 31825548 - 31825739
Alignment:
Q  24 tcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtc 123  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||||||     
T  31825548 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtg 31825647  T
Q  124 acagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    || |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  31825648 accgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctct 31825739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 21584585 - 21584779
Alignment:
Q  21 tcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtat 120  Q
    ||||||||||||||| ||||| || |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||     
T  21584585 tcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtac 21584684  T
Q  121 gtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    || || |||||||||||||||||||||||||| ||||| |  || ||||| ||||| ||||| |||||||| ||||||||||| |||||||||||    
T  21584685 gtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctct 21584779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 14261020 - 14261214
Alignment:
Q  21 tcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtat 120  Q
    ||||||||||||||||||||| |  || ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| ||     
T  14261020 tcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatac 14261119  T
Q  121 gtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    || |||||||| |  ||||||||||||||||| |||||||| ||||| |  ||||||||||| ||||| |||||||||||||||||||| |||||    
T  14261120 gtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctct 14261214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 10575584 - 10575387
Alignment:
Q  18 tcatcttcaacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtg 117  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| |  || |||||||||||||||||||| ||||| |||||||| || || ||||||    
T  10575584 tcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtg 10575485  T
Q  118 tatgtcacagcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    || || |||||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||||| |||||    
T  10575484 taagtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctct 10575387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
Q  26 aacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcac 125  Q
    |||| |||||||| ||||| || |||||||| ||||| | |||||| ||||||||||| || |||||||| |||||||| || || |||||||| || ||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  126 agcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacc 212  Q
    ||||||||||||||||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||||||||||||||||||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 215
Target Start/End: Complemental strand, 354551 - 354404
Alignment:
Q  69 ataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacattctccaagaagatcttcaagacacct 168  Q
    ||||||||||||||||||||| | ||||||||||||||| || |||||||| || |||||||||| |||| |||||| |||||| |||||||| || |||    
T  354551 ataaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 354452  T
Q  169 ctggtttcttcataga-tcaaaccgctgattctcttcacaccacctct 215  Q
    ||  |||| ||||||| | ||||| ||||| |||||||||||||||||    
T  354451 cttatttcctcatagattaaaaccactgatcctcttcacaccacctct 354404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 215
Target Start/End: Complemental strand, 10580928 - 10580787
Alignment:
Q  69 ataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacattctccaagaagatcttcaagacacct 168  Q
    ||||||||||||||||||||| | |||||||||| |     | |||||||| || ||||||||| |||||  ||||| |||||| |||||||| |  |||    
T  10580928 ataaacaacatccatagcagtcagagtcttcctcat-----gctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcct 10580834  T
Q  169 ctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    ||  |||| |||||||||||||| ||||| |||||||||||| ||||    
T  10580833 cttatttcctcatagatcaaaccactgatcctcttcacaccaactct 10580787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 41027738 - 41027572
Alignment:
Q  49 cttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacattctcca 148  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||| || |||||||||||||| ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  149 agaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    | ||||||||||| || || |  || ||||| |||||||||||||| || | |||||| || |||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctct 41027572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 30012194 - 30012096
Alignment:
Q  34 aaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatca 132  Q
    |||||||| ||||| ||||| || ||||| |  |||||||| |||||||||||||| || ||||| |  |  |||||||||||||| || |||||||||    
T  30012194 aaaccataaagggtccttccttgcctcttgagcgcataaaccacatccatagcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatca 30012096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 22898725 - 22898553
Alignment:
Q  43 agggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacat 142  Q
    |||||||||||||||||||| |  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||| | ||||||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  143 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    ||||||| || |||||||| || || |  || || ||||| |||||||| ||||| | |||||| || |||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctct 22898553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 22950393 - 22950221
Alignment:
Q  43 agggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcacgaatcacat 142  Q
    |||||||||||||||||||| |  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||| | ||||||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  143 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctct 215  Q
    ||||||| || |||||||| || || |  || || ||||| |||||||| ||||| | |||||| || |||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctct 22950221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 53328903 - 53328717
Alignment:
Q  26 aacctccgaaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcac 125  Q
    |||| |||||||| || || || |||||||| ||||| | ||| |||||||||||||| |||||||||||||| |  |  || || || |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  126 agcatcacgaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacc 212  Q
    ||||||||||||||||||||| |  |||||||| |  || || |  |||||||||||||| || || ||||| | ||||||||||||    
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 26358549 - 26358712
Alignment:
Q  34 aaaccatagagggttcttccctgtctcttcaaagcataaacaacatccatagcagtaacagtcttcctccttgcgtgttcagtgtatgtcacagcatcac 133  Q
    |||||||| ||||| ||||| || ||||| |  |||||||||||||||||||||||||| || || |  |  || ||||||||||| || ||||||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  134 gaatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgat 197  Q
    |||| |||||||| |  || ||||| |  ||||| |  |||||||||||||||| ||| |||||    
T  26358649 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat 26358712  T

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