View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_25 (Length: 234)
Name: NF4178_low_25
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 38498543 - 38498617
Alignment:
| Q |
154 |
caggtgattacttgagatcgcgtgcatcaacaccggagttcttattggagtagggacctttggaagtgatgatgt |
228 |
Q |
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| T |
38498543 |
caggtgattacttgagatcgcgtgcatcaacaccggagttcttattggagtagggacctttggaagtgatgatgt |
38498617 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38498390 - 38498459
Alignment:
| Q |
1 |
cagaatcaagtttacaaaatcatataataccaaatcaatttttctcactgtagaatcaaacacacaccgg |
70 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38498390 |
cagaatcaagtttacaaaatcatataattccaaatcaatttttctcactgtagaatcaaacacacaccgg |
38498459 |
T |
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