View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4178_low_3 (Length: 616)

Name: NF4178_low_3
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4178_low_3
NF4178_low_3
[»] chr7 (3 HSPs)
chr7 (196-438)||(3808383-3808629)
chr7 (20-205)||(3808672-3808855)
chr7 (518-611)||(3808181-3808275)
[»] chr2 (2 HSPs)
chr2 (113-348)||(43783520-43783745)
chr2 (135-324)||(9793267-9793450)
[»] chr4 (4 HSPs)
chr4 (113-348)||(22733246-22733473)
chr4 (405-438)||(54570942-54570975)
chr4 (406-438)||(8652096-8652128)
chr4 (406-438)||(8663903-8663935)
[»] chr3 (4 HSPs)
chr3 (113-348)||(21918061-21918290)
chr3 (113-348)||(48608248-48608477)
chr3 (283-365)||(9196159-9196242)
chr3 (135-279)||(48920525-48920667)
[»] chr1 (1 HSPs)
chr1 (127-348)||(23759794-23760007)
[»] chr8 (2 HSPs)
chr8 (113-324)||(39478215-39478418)
chr8 (113-348)||(26664600-26664829)
[»] chr6 (2 HSPs)
chr6 (113-348)||(30339939-30340168)
chr6 (406-438)||(24848371-24848403)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 196 - 438
Target Start/End: Complemental strand, 3808629 - 3808383
Alignment:
Q  196 tatatatatagagtggaattgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaa 295  Q
    |||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3808629 tatatatatatattggaatggagagtttgaatcataattatgtgtgtacataaaagatgctgattgagtagtttgaatctcatattaattcattgcagaa 3808530  T
Q  296 aggtatatgaaaggtcatgataaatgcttcagattttagtggttagttgggagatatgatcgcattaaatactgacaaagaagggaaaacttagagtgtt 395  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  3808529 aggtatatgaaaggtcatgataaatgcttcagagtttagtggttagttaggagatatgatcgcattaaatgctggcaaaggagggaaaacttagagtgtt 3808430  T
Q  396 tagggctaa----cagcttggcaagtttagcttttataataaaggat 438  Q
    |||||||||    ||||||| ||||||||||||||||||||||||||    
T  3808429 tagggctaacttccagcttgacaagtttagcttttataataaaggat 3808383  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 3808855 - 3808672
Alignment:
Q  20 gacccttcgagtgttgctcaaaatctttgttaacnnnnnnncataattacaagctgcataaataaatatatagaaacttgcctaagttaagccccattgg 119  Q
    ||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  3808855 gaccctttgagtgttgctcaaaatctttgttaacaaaaaaacataattacaagctgcataaataaatatatagaaacttgcctaagttaagcc--attag 3808758  T
Q  120 aggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatata 205  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||    
T  3808757 aggttcaatgatgcatcgagagaattctttatagctgaatctaaaccggaaacaaaggagggtgccattgcgcatatatatatata 3808672  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 518 - 611
Target Start/End: Complemental strand, 3808275 - 3808181
Alignment:
Q  518 aacaacttaattgccaacatttgtcactnnnnnnnn-tatatatttttaggacaaaactttggtgcattttcttatgtgtttctcctatgcttct 611  Q
    |||||||||||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3808275 aacaacttaattgccaacatttgtcattaaaaaaaaatatatatttttaggacaaaactttggtgcattttcttatgtgtttctcgtatgcttct 3808181  T

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Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 113 - 348
Target Start/End: Complemental strand, 43783745 - 43783520
Alignment:
Q  113 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtgga 212  Q
    ||||| ||||||  ||||| | |||| ||||||| ||||||||| |||||||| | |||||||||||||||    || ||  | | ||||||||||||||    
T  43783745 ccattagaggtttgatgatacgttgatagaattcgttatagctgtatgtaaactgcaaacaaaggagggtg----taaac--gcacatatatagagtgga 43783652  T
Q  213 attgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtca 312  Q
    || |||||||||||||||| |||| |||||||||| | |||| |||||||||||||||||||||||    |||||||||| ||| |||||| |||| |||    
T  43783651 atggagagtttgaatcatagttatatatgtacatagaggatgatgattgggtagtttgaatctcat----attcattgcataaatgtatatcaaagatca 43783556  T
Q  313 tgataaatgcttcagattttagtggttagttgggag 348  Q
    |||||||||||| ||  |||| ||||||||||||||    
T  43783555 tgataaatgcttgagtgtttaatggttagttgggag 43783520  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 135 - 324
Target Start/End: Complemental strand, 9793450 - 9793267
Alignment:
Q  135 ttgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtggaattgagagtttgaatcataatt 234  Q
    |||| ||||||| ||||||| | |||||||| | ||||||||||||||| ||   ||| |||||| ||||||  |||||| |||||||||||||||| ||    
T  9793450 ttgatagaattcattatagccgtatgtaaactgaaaacaaaggagggtgtcaacgcacgtgtatacatatag--tggaatggagagtttgaatcatagtt 9793353  T
Q  235 atgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtcatgataaatgctt 324  Q
    || | |||| ||| | |||| |||||||||||||||||||||||    |||||||||| ||| |||||| ||||||||||||||||||||    
T  9793352 atatgtgtagatagaggatgatgattgggtagtttgaatctcat----attcattgcataaatgtatatcaaaggtcatgataaatgctt 9793267  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 113 - 348
Target Start/End: Complemental strand, 22733473 - 22733246
Alignment:
Q  113 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtgga 212  Q
    ||||| ||||||  ||||| | |||| ||||||| ||||||||| |||||||| | |||||||||||| || ||  || || || |||||||||||||||    
T  22733473 ccattagaggtttgatgatacgttgatagaattcgttatagctgtatgtaaactgcaaacaaaggaggttgtca--acgcacgtgtatatatagagtgga 22733376  T
Q  213 attgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtca 312  Q
    || |||||||||||||||| ||||  ||||||||| | |||| |||||||||||||||||||||||    |||||||||| ||| |||||| ||||||||    
T  22733375 atggagagtttgaatcatagttat--atgtacatagaggatgatgattgggtagtttgaatctcat----attcattgcataaatgtatatcaaaggtca 22733282  T
Q  313 tgataaatgcttcagattttagtggttagttgggag 348  Q
    ||||||||| ||  |  |||| ||||||||||||||    
T  22733281 tgataaatgtttgggtgtttaatggttagttgggag 22733246  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 438
Target Start/End: Original strand, 54570942 - 54570975
Alignment:
Q  405 cagcttggcaagtttagcttttataataaaggat 438  Q
    ||||||||||||| ||||||||||||||||||||    
T  54570942 cagcttggcaagtgtagcttttataataaaggat 54570975  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 8652096 - 8652128
Alignment:
Q  406 agcttggcaagtttagcttttataataaaggat 438  Q
    |||||||||||| ||||||||||||||||||||    
T  8652096 agcttggcaagtctagcttttataataaaggat 8652128  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 8663903 - 8663935
Alignment:
Q  406 agcttggcaagtttagcttttataataaaggat 438  Q
    |||||||||||| ||||||||||||||||||||    
T  8663903 agcttggcaagtctagcttttataataaaggat 8663935  T

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Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 113 - 348
Target Start/End: Complemental strand, 21918290 - 21918061
Alignment:
Q  113 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtgga 212  Q
    ||||||||||||  ||||| | |||| ||||||| ||||| ||| |||||||| | ||||||| || |||| ||  ||||| || |||||||| ||||||    
T  21918290 ccattggaggttttatgatacgttgatagaattcgttataactgtatgtaaactgcaaacaaatgatggtgtca--acacacgtgtatatataaagtgga 21918193  T
Q  213 attgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtca 312  Q
    ||  ||||||||||||||| |||||| |||||||| | |||| |||||||||||||||||||||||||     ||||||| ||| |||||| ||||||||    
T  21918192 atgaagagtttgaatcatagttatgtgtgtacatagaggatgatgattgggtagtttgaatctcatatc----cattgcataaatgtatatcaaaggtca 21918097  T
Q  313 tgataaatgcttcagattttagtggttagttgggag 348  Q
    |||||||||||| ||  |||| |||||| |||||||    
T  21918096 tgataaatgcttgagtgtttaatggttacttgggag 21918061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 113 - 348
Target Start/End: Original strand, 48608248 - 48608477
Alignment:
Q  113 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtgga 212  Q
    ||||| ||||||  ||||| | |||| ||||||| ||||||||| |||||||| | ||||||||||||||| ||  || || || |||||||||||||||    
T  48608248 ccattagaggtttgatgatacgttgatagaattcgttatagctgtatgtaaactgcaaacaaaggagggtgtca--acgcacgtgtatatatagagtgga 48608345  T
Q  213 attgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtca 312  Q
    ||  ||||||||||||||| |||| | |||||||| | |||| |||||||||||||||||||||||    ||||||| || ||| |||||| |||||||     
T  48608346 atgaagagtttgaatcatagttatatgtgtacatagaggatgatgattgggtagtttgaatctcat----attcattacataaatgtatatcaaaggtcc 48608441  T
Q  313 tgataaatgcttcagattttagtggttagttgggag 348  Q
    ||||||||||||  |  |||| ||||||||||||||    
T  48608442 tgataaatgcttgggtgtttaatggttagttgggag 48608477  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 365
Target Start/End: Complemental strand, 9196242 - 9196159
Alignment:
Q  283 attcattgcagaaaggtatatgaaaggtcatgataaatgcttc-agattttagtggttagttgggagatatgatcgcattaaat 365  Q
    |||||||||| |||||||||| ||||||||||||||||||||| || |||| |  ||||||||||||| |||||||||||||||    
T  9196242 attcattgcataaaggtatatcaaaggtcatgataaatgcttcaaggttttggaagttagttgggagagatgatcgcattaaat 9196159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 279
Target Start/End: Complemental strand, 48920667 - 48920525
Alignment:
Q  135 ttgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtggaattgagagtttgaatcataatt 234  Q
    |||| ||||||  |||||| || |||||||| | ||||||||||||||| ||  || |  || |||| || ||||||||| |||||||||||||||| ||    
T  48920667 ttgatagaatttgttatagttgtatgtaaactgcaaacaaaggagggtgtca--acgcccgtgtatacattgagtggaatggagagtttgaatcatagtt 48920570  T
Q  235 atgtatgtacataaaagatgctgattgggtagtttgaatctcata 279  Q
    || | |||||||| | ||||  |||||||||||| ||||||||||    
T  48920569 atatgtgtacatagaggatgacgattgggtagttagaatctcata 48920525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 127 - 348
Target Start/End: Complemental strand, 23760007 - 23759794
Alignment:
Q  127 atgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtggaattgagagtttgaa 226  Q
    ||||| |||||| ||||||| ||||| ||| |||||||| |  |||||||||||||| ||  || || || || |||||||||||||| |||||||||||    
T  23760007 atgatacattgatagaattcgttataactgtatgtaaactg--aacaaaggagggtgtca--acgcacgtgtaaatatagagtggaatggagagtttgaa 23759912  T
Q  227 tcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtcatgataaatgcttca 326  Q
    ||||| |||| | |||||||| | |||| |||||||||||||||||||||||    |||||||||| ||| |||||| ||||||||||||||||| ||      
T  23759911 tcatagttatatgtgtacatagaggatggtgattgggtagtttgaatctcat----attcattgcataaatgtatatcaaaggtcatgataaatgtttgg 23759816  T
Q  327 gattttagtggttagttgggag 348  Q
    |  |||| ||||||||||||||    
T  23759815 gtgtttaatggttagttgggag 23759794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 113 - 324
Target Start/End: Complemental strand, 39478418 - 39478215
Alignment:
Q  113 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtgga 212  Q
    ||||| ||||||  ||||| |||||| ||||||| |||||||||  |||||||   ||||||||||||||| ||   ||| ||||||||||  |||| ||    
T  39478418 ccattagaggtttgatgatacattgatagaattcgttatagctg--tgtaaactacaaacaaaggagggtgtcaacgcacctgtatatata--gagttga 39478323  T
Q  213 attgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtca 312  Q
    || |||||||||||||||| |||| | |||||||| | |||| ||||||||||||| |||||||||    |||||||||| ||| |||||| ||| ||||    
T  39478322 atggagagtttgaatcatagttatatgtgtacatagaggatgatgattgggtagttcgaatctcat----attcattgcataaatgtatatcaaaagtca 39478227  T
Q  313 tgataaatgctt 324  Q
    ||||||||||||    
T  39478226 tgataaatgctt 39478215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 113 - 348
Target Start/End: Complemental strand, 26664829 - 26664600
Alignment:
Q  113 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtgga 212  Q
    ||||| ||||||  ||||| | |||| ||||||| |||||| || ||||||||   ||||||| ||||||| ||  || || || |||||||||||||||    
T  26664829 ccattagaggtttgatgatacgttgatagaattcgttatagttgtatgtaaactacaaacaaatgagggtgtca--acgcacgtgtatatatagagtgga 26664732  T
Q  213 attgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtca 312  Q
    || || ||||||||||||| |||| | |||||||| | || | |||||| ||||||||||||||||    |||||||||| |||  ||||| ||||||||    
T  26664731 atggaaagtttgaatcatagttatatgtgtacatagaggacgatgattgagtagtttgaatctcat----attcattgcataaatctatatcaaaggtca 26664636  T
Q  313 tgataaatgcttcagattttagtggttagttgggag 348  Q
    ||||||| |||| ||  |||| ||||||||||||||    
T  26664635 tgataaacgcttgagtgtttaatggttagttgggag 26664600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 113 - 348
Target Start/End: Original strand, 30339939 - 30340168
Alignment:
Q  113 ccattggaggttcaatgatgcattgagagaattctttatagctgaatgtaaaccggaaacaaaggagggtgccattacacatgtatatatatagagtgga 212  Q
    ||||| ||||||  ||||| |||||| ||||||| ||||| ||| || ||| | | ||||||||||||||| ||  || |  || |||||||||||||||    
T  30339939 ccattagaggtttgatgatacattgatagaattcgttatacctgtatataagctgtaaacaaaggagggtgtca--acgcgcgtgtatatatagagtgga 30340036  T
Q  213 attgagagtttgaatcataattatgtatgtacataaaagatgctgattgggtagtttgaatctcatattaattcattgcagaaaggtatatgaaaggtca 312  Q
    || |||||||||||||||| |||| | |||| ||  | |||| |||||||||||||||||||||||    |||||||||| ||| |||||| ||||||||    
T  30340037 atggagagtttgaatcatagttatatgtgtatatggaggatgatgattgggtagtttgaatctcat----attcattgcataaatgtatatcaaaggtca 30340132  T
Q  313 tgataaatgcttcagattttagtggttagttgggag 348  Q
    ||||| ||| ||  |  |||| ||||||||||||||    
T  30340133 tgatagatgtttgggtgtttaatggttagttgggag 30340168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 24848371 - 24848403
Alignment:
Q  406 agcttggcaagtttagcttttataataaaggat 438  Q
    |||||||||||| ||||||||||||||||||||    
T  24848371 agcttggcaagtctagcttttataataaaggat 24848403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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