View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4178_low_4 (Length: 580)

Name: NF4178_low_4
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4178_low_4
NF4178_low_4
[»] chr5 (3 HSPs)
chr5 (18-320)||(30468532-30468834)
chr5 (398-574)||(30469118-30469294)
chr5 (232-281)||(31983230-31983279)
[»] chr4 (2 HSPs)
chr4 (35-105)||(37618674-37618744)
chr4 (35-93)||(8541287-8541345)
[»] chr8 (3 HSPs)
chr8 (35-93)||(23820622-23820680)
chr8 (35-93)||(40172926-40172984)
chr8 (232-281)||(8024648-8024697)
[»] chr6 (1 HSPs)
chr6 (232-281)||(18647871-18647920)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 30468532 - 30468834
Alignment:
Q  18 acgttctaccccgtctgttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcgattccactgccactttctctccatc 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30468532 acgttctaccccgtatgttccatgtcttttctactttaaccgtcatatttctcctctcatacttcgccgtcgtcgattccactgccactttctttccatc 30468631  T
Q  118 gccacgggaataatgagattaagcgcgagagtgatcgacctaaacttattccctctctccaggtactcaatctgttaactttgatgttagttcatacaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30468632 gccacgggaataatgagattaagcgcgagagtgatcgacctaaacttattccctctctccaggtactcaatctgttaactttgatgttagttcatacaaa 30468731  T
Q  218 tttgcatgtaacaaatttgtataagaacaggcatagacttcttaaccaatcaaataaactgctcaatcaaagcttactcaattttattgtaagagaataa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  30468732 tttgcatgtaacaaatttgtataagaacaggcatagacttcttaaccaatcaaataaactgctcaatcaaagcttactcaattttattgtaaaagaagaa 30468831  T
Q  318 ata 320  Q
    |||    
T  30468832 ata 30468834  T

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Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 398 - 574
Target Start/End: Original strand, 30469118 - 30469294
Alignment:
Q  398 aagtagtcgtttttattagattatgtcattgctacaaaattttctctatatgggtttatgttgattttgaaatgattgcaaatttgtgtataagcatctg 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30469118 aagtagtcgtttttattagattatgtcattgctacaaaattttctctatatgggttcatgttgattttgaaatgattgcaaatttgtgtataagcatctg 30469217  T
Q  498 tatgcaaacctctcttttaagagcactattttttgttccggctttgtgttttttgcggatgtgcttatgatctgtgc 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30469218 tatgcaaacctctcttttaagagcactattttttgttccggctttgtgttttttgcggatgtgcttatgatttgtgc 30469294  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 31983230 - 31983279
Alignment:
Q  232 atttgtataagaacaggcatagacttcttaaccaatcaaataaactgctc 281  Q
    ||||||||||||||| ||||||||||||||| |||| ||| ||| |||||    
T  31983230 atttgtataagaacaagcatagacttcttaatcaataaaaaaaattgctc 31983279  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 37618744 - 37618674
Alignment:
Q  35 ttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcgattccactgccac 105  Q
    |||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| || ||||||||    
T  37618744 ttccatgtcttttctactttcaccgtcgtatttctcctctcatccctcgccgtcgtcgactcaactgccac 37618674  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 8541287 - 8541345
Alignment:
Q  35 ttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcga 93  Q
    |||||||||||||| ||||| || ||| |||||||| ||||||  ||||||||||||||    
T  8541287 ttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcga 8541345  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 23820622 - 23820680
Alignment:
Q  35 ttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcga 93  Q
    |||||||||||||| ||||| || ||| |||||||| ||||||  ||||||||||||||    
T  23820622 ttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcga 23820680  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 40172984 - 40172926
Alignment:
Q  35 ttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcga 93  Q
    |||||||||||||| ||||| || ||| |||||||| ||||||  ||||||||||||||    
T  40172984 ttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcga 40172926  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 8024648 - 8024697
Alignment:
Q  232 atttgtataagaacaggcatagacttcttaaccaatcaaataaactgctc 281  Q
    ||||||||||||||| ||||||||||||||| |||| ||| ||| |||||    
T  8024648 atttgtataagaacaagcatagacttcttaatcaataaaaaaaattgctc 8024697  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 18647871 - 18647920
Alignment:
Q  232 atttgtataagaacaggcatagacttcttaaccaatcaaataaactgctc 281  Q
    ||||||||||||||| ||||||||||||||| |||| ||| ||| |||||    
T  18647871 atttgtataagaacaagcatagacttcttaatcaataaaaaaaattgctc 18647920  T

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