View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_5 (Length: 556)
Name: NF4178_low_5
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Original strand, 44436327 - 44436857
Alignment:
| Q |
11 |
cataggaacgtattttttgctgcgaatgtcatcttctatgaggatgatgctctaccacaattctacatacatctctattgattttcctctatatatcttt |
110 |
Q |
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| T |
44436327 |
cataggaacgtattttttgctgcgaatgtcatcttctatgaggaagatgctctaccacaattctacatacatctctattgattttcctctatatatcttt |
44436426 |
T |
|
| Q |
111 |
ttgccatactaacatttgaagcctcctaaagcagctgcgtaacagtatacttcaaaggctagattagaagcgtgattttttctcaccac--caaggcctg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44436427 |
ttgccatactaacatttgaagcctcctaaagcagctgcgtaacagtatacttcaaaggctagattagaagcgtgattttttctcaccacaccaaggcctg |
44436526 |
T |
|
| Q |
209 |
cacaatagataaaatgatgggaaaacaaaaattgcctaccggtaaagtgatgcttgattatagtccacatatgcaattccttctaacaattaacaaaacg |
308 |
Q |
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| T |
44436527 |
cacaatagataaaatgatgggaaaacaaaaattgcctaccggtaaagtgatgcttgattatagtccacatatgcaattccttctaacaattaacaaaacg |
44436626 |
T |
|
| Q |
309 |
agagcattcaaggaaagtgtgcaacttatcatcaaaactcccatgacacataacacactcggggcagtaggctgcatatactgtgttaaccagatccaag |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
44436627 |
agagcattcaaggaaagtgtgcaacttatcatcaaaactcccatgacacataacacactcggggcagtaggctgcatatactgcgttgaccagatccaag |
44436726 |
T |
|
| Q |
409 |
ggtctgacctgataccatttccttcaccaatttcccacgtatatctaaaggacaacggcgatacaatactccaaatacttgtctatgtgtaacagatcga |
508 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44436727 |
ggtctgacctgatgccatttccttcaccaatttcccacgtatatctaaaggacaacggcgatacaatactccaaatacttctctatgtgtaacagatcga |
44436826 |
T |
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| Q |
509 |
ggttgtcctccaaaaagccgcttcttgaaaa |
539 |
Q |
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| T |
44436827 |
ggttgtcctccaaaaagccgcttcttgaaaa |
44436857 |
T |
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