View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_6 (Length: 548)
Name: NF4178_low_6
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 540
Target Start/End: Original strand, 29729639 - 29730160
Alignment:
| Q |
17 |
agcaacatcatcaacatttgggaagaaatcatgccaagacatcaatcataatcataatcaatatttatctaatactgccaataataattagcatatatat |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29729639 |
agcaacatcatcaacatttgagaagaaatcatgccaagacatcaatcataatcataatcaatatttatctaatactgccaatcataattagcatatatat |
29729738 |
T |
|
| Q |
117 |
cttaacaaaaatgtccttttagctaaagcaaaatcatagagaattggaggtcggaattctttaatttgctcgcagcaccctttaagtaaacaattggatt |
216 |
Q |
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|||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
29729739 |
cttaacaaaaatgtccttatagctaaatcagaatcatagagaattggaggtcggaaatctttaatttgctcgcagcaccatttaagtaaac--ttggatt |
29729836 |
T |
|
| Q |
217 |
ggatttggaataataatacctggaactttgcagttcaagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaagagaaatt |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729837 |
ggatttggaataataatacctggaactttgcagatcaagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaagagaaatt |
29729936 |
T |
|
| Q |
317 |
aattccattcaatttaaaatggcgtaaaccagatattgtttttgcaattgccaatgcttcattacacttgccaacaagagatgtgggactttgcagatca |
416 |
Q |
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| T |
29729937 |
aattccattcaatttaagatggcgtaaaccagatattgtttttgcaattgctaatgcttcattacacttgccaacaagagatgtgggactttgcagatca |
29730036 |
T |
|
| Q |
417 |
atagattcaagaagatggcagccgtcaagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagtcattgttt |
516 |
Q |
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| T |
29730037 |
aaagattcaagatgatggcagccgtcaagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagtcattgttt |
29730136 |
T |
|
| Q |
517 |
tcgcaatagcaagtgcttcatctc |
540 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
29730137 |
tcgcaaaagcaagtgcttcatctc |
29730160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 534
Target Start/End: Complemental strand, 29713433 - 29713318
Alignment:
| Q |
419 |
agattcaagaagatggcagccgtcaagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagtcattgttttc |
518 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||| |||||| || ||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| |
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| T |
29713433 |
agattcaagaagagggcagccatcaagaatagcaaccaatccaccacagttactaaaaaatccattcaatttaagatggcataacccagacattgttttt |
29713334 |
T |
|
| Q |
519 |
gcaatagcaagtgctt |
534 |
Q |
| |
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|||||| ||| ||||| |
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| T |
29713333 |
gcaataacaaatgctt |
29713318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 364
Target Start/End: Complemental strand, 29713436 - 29713329
Alignment:
| Q |
253 |
aagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaagagaaattaattccattcaatttaaaatggcgtaaaccagatat |
352 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||| || ||||| | | || |||||||||||||| ||||| ||| ||||| || |
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| T |
29713436 |
aagagattcaagaagagggcagccatcaagaatagcaaccaatccaccacagttactaaa----aaatccattcaatttaagatggcataacccagacat |
29713341 |
T |
|
| Q |
353 |
tgtttttgcaat |
364 |
Q |
| |
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|||||||||||| |
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| T |
29713340 |
tgtttttgcaat |
29713329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 538
Target Start/End: Complemental strand, 29752744 - 29752615
Alignment:
| Q |
409 |
gcagatcaatagattcaagaagatggcagccgtcaagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagt |
508 |
Q |
| |
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||||||||| |||||| ||||| |||| ||||||||||||||||| ||| || ||||||||| | | |||| || ||| ||||||||||||||| | |
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| T |
29752744 |
gcagatcaagagattcgagaagcgggcaaccgtcaagaatagcaagcaattcatcatagttaagccataatccaagcaattttagatggcgtaacccact |
29752645 |
T |
|
| Q |
509 |
cattgttttcgcaatagcaagtgcttcatc |
538 |
Q |
| |
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||||||||| |||||| || ||||||||| |
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| T |
29752644 |
cattgtttttgcaatacaaaatgcttcatc |
29752615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 29752744 - 29752681
Alignment:
| Q |
246 |
gcagttcaagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaag |
309 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| | ||||||||||||||||||| || |||||||||| |
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| T |
29752744 |
gcagatcaagagattcgagaagcgggcaaccgtcaagaatagcaagcaattcatcatagttaag |
29752681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 30621499 - 30621545
Alignment:
| Q |
254 |
agagattcaagaagagggcagcggtcaagaatagcaagcaatccaac |
300 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||| ||||| |
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|
| T |
30621499 |
agagattcaagaagagggcatccatcaagaatagcaagcaacccaac |
30621545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 534
Target Start/End: Original strand, 41100173 - 41100288
Alignment:
| Q |
419 |
agattcaagaagatggcagccgtcaagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagtcattgttttc |
518 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |||||| |||| | |||| ||| ||| |||||||| || ||||||||||||||||| |||| |||| |
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| T |
41100173 |
agattcaagaagagggcagccatcaagaagagcaagcaatctaccataattacgcaaaaatccattcaattcaagatggcgtaacccagacattattttt |
41100272 |
T |
|
| Q |
519 |
gcaatagcaagtgctt |
534 |
Q |
| |
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|||||| ||| ||||| |
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| T |
41100273 |
gcaataacaaatgctt |
41100288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 41100170 - 41100277
Alignment:
| Q |
253 |
aagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaagagaaattaattccattcaatttaaaatggcgtaaaccagatat |
352 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||| | |||| ||| | | || ||||||||||| || ||||||||| ||||| || |
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|
| T |
41100170 |
aagagattcaagaagagggcagccatcaagaagagcaagcaatctaccataattacgcaa----aaatccattcaattcaagatggcgtaacccagacat |
41100265 |
T |
|
| Q |
353 |
tgtttttgcaat |
364 |
Q |
| |
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| |||||||||| |
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|
| T |
41100266 |
tatttttgcaat |
41100277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 27718396 - 27718359
Alignment:
| Q |
251 |
tcaagagattcaagaagagggcagcggtcaagaatagc |
288 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
27718396 |
tcaagagattcgagaagagggcatcggtcaagaatagc |
27718359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 38285760 - 38285719
Alignment:
| Q |
253 |
aagagattcaagaagagggcagcggtcaagaatagcaagcaa |
294 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
38285760 |
aagagattcaagaagagggcatccatcaagaatagcaagcaa |
38285719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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