View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_8 (Length: 428)
Name: NF4178_low_8
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 81 - 253
Target Start/End: Complemental strand, 21145419 - 21145247
Alignment:
| Q |
81 |
tacactttgcatggttatgataagaggatcacatgaatgaaatgatttatcaaattacatatcaaaataaagataaccttttttatatacattccaataa |
180 |
Q |
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| T |
21145419 |
tacactttgcatggttatgataagagaatcacatgaatgaaatgatttatcaaattacatatcaaaataaagataacattttttagatacattccaataa |
21145320 |
T |
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| Q |
181 |
gtcagttcaattattgaaagaatattattgccactattttaactactattttaaaagtaatacatttcttgtt |
253 |
Q |
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| T |
21145319 |
gtcagttcaattattgaaagaatattattgccactattttaactactattttaaaagtaatacatttcttgtt |
21145247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 242 - 350
Target Start/End: Complemental strand, 21145231 - 21145124
Alignment:
| Q |
242 |
acatttcttgttaataacacaaaagacacaatactgttnnnnnnntattttaaaataaagtatagtaaactctaccattcaatgcaggaaaacaatattc |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |
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| T |
21145231 |
acatttcttgttaataacacaaaagacacaatactgttaaaaaa-tattttaaaataaagtatagtaaactctactattcaatgaaggacaacaatattg |
21145133 |
T |
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| Q |
342 |
tatttaaat |
350 |
Q |
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||||||||| |
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| T |
21145132 |
tatttaaat |
21145124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 21145132 - 21145094
Alignment:
| Q |
375 |
tatttaaatacttcttctcaatcttatataattcatatg |
413 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |
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| T |
21145132 |
tatttaaatgcttcttctcaatcttatataattcatatg |
21145094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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