View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4178_low_9 (Length: 424)
Name: NF4178_low_9
Description: NF4178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4178_low_9 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Complemental strand, 7210788 - 7210374
Alignment:
| Q |
10 |
catcatcaatgttttaaaaacaagaccggagatcaaaccgcagagacctctgagtcatggtttaatcgattaaaccatggttaaaccagatgacagataa |
109 |
Q |
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||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7210788 |
catcaacaatgttttaaaaacaagaacggagatctaaccgcagagacctctgagtcatggtttaatcaattaaaccatggttaaaccagatgacagataa |
7210689 |
T |
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| Q |
110 |
atactaaaaaattattaaaccagtcagcgaactgactggttcagttcgatttttaaaacatcggtcatcaatctaacagattttctaaatcatatacatt |
209 |
Q |
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| T |
7210688 |
atactaaaaaattattaaaccagtcagcgaactgactggttcaattcgatttttaaaacatcggtcatcaatctaacagattttctaaatcatatacatt |
7210589 |
T |
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| Q |
210 |
tcagtaatttagacatacagaccttggattgctttggcaaggaaaggatgagataagtcctgaaaaatcaatcaacattgaattgaacaatgactaaaac |
309 |
Q |
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| T |
7210588 |
tcagtaatttagacatacagaccttggattgctttggcaaggaaaggatgagataagtcctgaaaaatcaatcaacattgaattgaacaatgactaaaac |
7210489 |
T |
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| Q |
310 |
aggttagctgctttccaaggatacataaaatttcaagagcattgatttcattttctatagtggtgtcgatgtcctatgttatttacatcagcaagttgac |
409 |
Q |
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| T |
7210488 |
aggttagctgctttccaaggatacataaaattttaagagcattgatttcattttctatagtggtgtcgatgtcctatgttatttacatcagcaagttgac |
7210389 |
T |
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| Q |
410 |
gtattgtcagtgtcg |
424 |
Q |
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| T |
7210388 |
gtattgtcagtgtcg |
7210374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 156 - 368
Target Start/End: Complemental strand, 7196899 - 7196687
Alignment:
| Q |
156 |
cgatttttaaaacatcggtcatcaatctaacagattttctaaatcatatacatttcagtaatttagacatacagaccttggattgctttggcaaggaaag |
255 |
Q |
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| T |
7196899 |
cgatttataaaacatcggtcataaaactaacaatttgtctaaatcatatacatttaagtaatttagacatacaaaccttggattgctttggcaaggagag |
7196800 |
T |
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| Q |
256 |
gatgagataagtcctgaaaaatcaatcaacattgaattgaacaatgactaaaacaggttagctgctttccaaggatacataaaatttcaagagcattgat |
355 |
Q |
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| T |
7196799 |
gacgagataagtcctgaaaaatcaatccacattcaattgaacaatgactaaaacgggttagctgctttccaaggaaacataaaatttcaaaagtattgat |
7196700 |
T |
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| Q |
356 |
ttcattttctata |
368 |
Q |
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|| ||| |||||| |
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| T |
7196699 |
tttattctctata |
7196687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 7204167 - 7204053
Alignment:
| Q |
159 |
tttttaaaacatcggtcatcaatctaacagattttctaaatcatatacatttcagtaatttagacatacagaccttggattgctttggcaaggaaaggat |
258 |
Q |
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| T |
7204167 |
ttttaaaaacatcgatcataatactaacaaattatctaaatcatatacatttaagtaatttagacatacaaaccttggattgctttggcaaggagaggat |
7204068 |
T |
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| Q |
259 |
gagataagtcctgaa |
273 |
Q |
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| T |
7204067 |
gagataagtcctgaa |
7204053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 368
Target Start/End: Complemental strand, 7204056 - 7203980
Alignment:
| Q |
293 |
tgaacaatgactaaaacaggttagct-gctttccaaggatacataaaatttcaagagcattgatttcattttctata |
368 |
Q |
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|||||||||| ||||||||||||||| |||||||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
7204056 |
tgaacaatgattaaaacaggttagcttgctttccaaggaaacataaaattttaaaagcattgatttcattttctata |
7203980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 7196948 - 7196912
Alignment:
| Q |
21 |
ttttaaaaacaagaccggagatcaaaccgcagagacc |
57 |
Q |
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| T |
7196948 |
ttttaaaaacaagaccagagatcaaaccgctgagacc |
7196912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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