View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4179_high_3 (Length: 264)
Name: NF4179_high_3
Description: NF4179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4179_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 12072895 - 12072654
Alignment:
| Q |
18 |
gacagacagatactcaatgctagtatgcatagatcacgattccatcaattgcaatcataggtatcttaannnnnnngacttcacgttgaattgagttttc |
117 |
Q |
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| T |
12072895 |
gacagacagatagtcaatgctagtatgcatagatcacgattccatcaattgctatcataggtatcttaatttttttgacttcacgttgaattgagttttc |
12072796 |
T |
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| Q |
118 |
ttgtttcttccttccaagtgacacnnnnnnnnnnnnntttaacataaggtattaattatgggtttcctctacttattttgagattgtcacggttgtttat |
217 |
Q |
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| T |
12072795 |
ttgtttcttccttccaagtgacactatatatatat--tttaacataaggtattaattatgggtttcctctacttattttgagattgtcacggttgtttat |
12072698 |
T |
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| Q |
218 |
ttgttgatcaaaattcgaatcagtactgtgtggttctgtgctgc |
261 |
Q |
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| T |
12072697 |
ttcttgatcaaaattcgaatcagtactgtgtggttctgttctgc |
12072654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 12065975 - 12065870
Alignment:
| Q |
155 |
tttaacataaggtattaattatgggtttcctctacttattttgagattgtcacggttgtttatttgttgatcaaaattcgaatcagtactgtgtggttct |
254 |
Q |
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| T |
12065975 |
tttaacataaggtattaattatgggtttcctctacttattttaagattgtcacggttg-ttatttgttgatcaaaattcgaatcagtactgtgtggttct |
12065877 |
T |
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| Q |
255 |
gtgctgc |
261 |
Q |
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| T |
12065876 |
gttctgc |
12065870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 12066050 - 12066005
Alignment:
| Q |
96 |
cttcacgttgaattgagttttcttgtttcttccttccaagtgacac |
141 |
Q |
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| T |
12066050 |
cttcacgttgaattgagttttcttgtttcttccttccaagtgacac |
12066005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 4765034 - 4765120
Alignment:
| Q |
155 |
tttaacataaggtattaattatgggtt---tcctctacttattttgagattgtcacggttgtttatttgttgatcaaaattcgaatca |
239 |
Q |
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| T |
4765034 |
tttaacataaggtattaattatgggtttactcttcttcttgttttgagattgtcacggttg-ttatttgttgatcagaattcgaatca |
4765120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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